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BMRB: 15071

3I8R

NMR Assignments of the apo Corynebacterium diphtheria Heme Oxygenase

Authors

Assembly

cdHO

Entity

1. cdHO (polymer, Thiol state: not present), 215 monomers, 24137.87 Da Detail

MTTATAGLAV ELKQSTAQAH EKAEHSTFMS DLLKGRLGVA EFTRLQEQAW LFYTALEQAV DAVRASGFAE SLLDPALNRA EVLARDLDKL NGSSEWRSRI TASPAVIDYV NRLEEIRDNV DGPALVAHHY VRYLGDLSGG QVIARMMQRH YGVDPEALGF YHFEGIAKLK VYKDEYREKL NNLELSDEQR EHLLKEATDA FVFNHQVFAD LGKGL

Formula weight

24137.87 Da

Source organism

Corynebacterium diphtheriae

Exptl. method

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 92.6 %, Completeness: 42.1 %, Completeness (bb): 72.3 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	42.1 % (1042 of 2478)	24.6 % (314 of 1278)	56.1 % (545 of 971)	79.9 % (183 of 229)
Backbone	72.3 % (927 of 1282)	51.8 % (228 of 440)	81.8 % (516 of 631)	86.7 % (183 of 211)
Sidechain	18.8 % (263 of 1397)	10.4 % (87 of 838)	32.5 % (176 of 541)	0.0 % (0 of 18)
Aromatic	0.0 % (0 of 210)	0.0 % (0 of 105)	0.0 % (0 of 103)	0.0 % (0 of 2)
Methyl	22.9 % (59 of 258)	16.3 % (21 of 129)	29.5 % (38 of 129)

1. cdHO

MTTATAGLAV ELKQSTAQAH EKAEHSTFMS DLLKGRLGVA EFTRLQEQAW LFYTALEQAV DAVRASGFAE SLLDPALNRA EVLARDLDKL NGSSEWRSRI TASPAVIDYV NRLEEIRDNV DGPALVAHHY VRYLGDLSGG QVIARMMQRH YGVDPEALGF YHFEGIAKLK VYKDEYREKL NNLELSDEQR EHLLKEATDA FVFNHQVFAD LGKGL

Show sample condition

Sample

Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	cdHO	[U-13C; U-15N; U-2H]		1.0 ~ 2.0 mM
2	H2O	natural abundance		95 %
3	D2O	natural abundance		5 %
4	DSS	natural abundance		1 mM
5	potassium phosphate	natural abundance		50 mM
6	potassium chloride	natural abundance		100 mM

LACS Plot; CA

Referencing offset: 2.62 ppm, Outliers: 2 Detail

LACS Plot; CB

Referencing offset: 2.62 ppm, Outliers: 2 Detail

LACS Plot; CO

Referencing offset: 0.83 ppm, Outliers: 2 Detail

Release date

2007-06-25

Citation

NMR assignments of cd-HO, a 24 kDa heme oxygenase from Corynebacterium diphtheria
Hom, K., Furci, L.M., Deshmukh, R., Wilks, A.
Biomol. NMR Assign. (2007), 1, 55-56, PubMed 19636825 , DOI 10.1007/s12104-007-9014-3 , Abstract

Entries sharing articles BMRB: 2 entries Detail

  BMRB: 15070 released on 2007-06-25
    Title NMR Assignments of the apo Corynebacterium diphtheria Heme Oxygenase-G135A
  BMRB: 15073 released on 2007-06-25
    Title NMR assignments of CO-bound ferrous Corynebacterium diphtheria Heme Oxygenase

Related entities 1. cdHO, : 1 : 12 : 2 : 1 : 99 entities Detail

Experiments performed 8 experiments Detail

1 2D 1H-15N HSQC

Instrument

Varian INOVA - 500 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	cdHO	[U-13C; U-15N; U-2H]		1.0 ~ 2.0 mM
2	H2O	natural abundance		95 %
3	D2O	natural abundance		5 %
4	DSS	natural abundance		1 mM
5	potassium phosphate	natural abundance		50 mM
6	potassium chloride	natural abundance		100 mM

2 3D CBCA(CO)NH

Instrument

Varian INOVA - 500 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	cdHO	[U-13C; U-15N; U-2H]		1.0 ~ 2.0 mM
2	H2O	natural abundance		95 %
3	D2O	natural abundance		5 %
4	DSS	natural abundance		1 mM
5	potassium phosphate	natural abundance		50 mM
6	potassium chloride	natural abundance		100 mM

3 3D HNCO

Instrument

Varian INOVA - 500 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	cdHO	[U-13C; U-15N; U-2H]		1.0 ~ 2.0 mM
2	H2O	natural abundance		95 %
3	D2O	natural abundance		5 %
4	DSS	natural abundance		1 mM
5	potassium phosphate	natural abundance		50 mM
6	potassium chloride	natural abundance		100 mM

4 3D HNCA

Instrument

Varian INOVA - 500 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	cdHO	[U-13C; U-15N; U-2H]		1.0 ~ 2.0 mM
2	H2O	natural abundance		95 %
3	D2O	natural abundance		5 %
4	DSS	natural abundance		1 mM
5	potassium phosphate	natural abundance		50 mM
6	potassium chloride	natural abundance		100 mM

5 3D HN(CO)CA

Instrument

Varian INOVA - 500 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	cdHO	[U-13C; U-15N; U-2H]		1.0 ~ 2.0 mM
2	H2O	natural abundance		95 %
3	D2O	natural abundance		5 %
4	DSS	natural abundance		1 mM
5	potassium phosphate	natural abundance		50 mM
6	potassium chloride	natural abundance		100 mM

6 3D 1H-15N NOESY

Instrument

Varian INOVA - 500 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	cdHO	[U-13C; U-15N; U-2H]		1.0 ~ 2.0 mM
2	H2O	natural abundance		95 %
3	D2O	natural abundance		5 %
4	DSS	natural abundance		1 mM
5	potassium phosphate	natural abundance		50 mM
6	potassium chloride	natural abundance		100 mM

7 3D HN(CA)CO

Instrument

Varian INOVA - 500 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	cdHO	[U-13C; U-15N; U-2H]		1.0 ~ 2.0 mM
2	H2O	natural abundance		95 %
3	D2O	natural abundance		5 %
4	DSS	natural abundance		1 mM
5	potassium phosphate	natural abundance		50 mM
6	potassium chloride	natural abundance		100 mM

8 3D HNCACB

Instrument

Varian INOVA - 500 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Type	Concentration
1	cdHO	[U-13C; U-15N; U-2H]		1.0 ~ 2.0 mM
2	H2O	natural abundance		95 %
3	D2O	natural abundance		5 %
4	DSS	natural abundance		1 mM
5	potassium phosphate	natural abundance		50 mM
6	potassium chloride	natural abundance		100 mM

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr15071_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr15071_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chem_shift_list_1	Warning	870		92.1 (chain: 1, length: 215)
1	Chemical shift references	chemical_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chem_shift_list_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 215, Sequence coverage: 92.1%
- Total number of assignments
  - ¹³C chemical shifts: 505
  - ¹H chemical shifts: 185
  - ¹⁵N chemical shifts: 180
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1