BMRBj - BMREntryMaster

Found 1 Document (0.47 seconds)

BMRB: 15612

3DV0

Extended Polypeptide Linkers Establish the Spatial Architecture of a Pyruvate Dehydrogenase

Authors

Milne, J.L.S., Stott, K.M.

Assembly

Inner-linker peptide from PDH

Entity

1. Inner-linker peptide from PDH (polymer, Thiol state: not present), 37 monomers, 3639.990 Da Detail

AGGAKPAPAA AEEKAAPAAA KPATTEGEFP ETREKMS

Formula weight

3639.99 Da

Source organism

Geobacillus stearothermophilus

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 73.0 %, Completeness: 65.2 %, Completeness (bb): 55.6 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C
All	65.2 % (225 of 345)	75.1 % (148 of 197)	52.0 % (77 of 148)
Backbone	55.6 % (100 of 180)	75.0 % (54 of 72)	42.6 % (46 of 108)
Sidechain	74.4 % (148 of 199)	75.2 % (94 of 125)	73.0 % (54 of 74)
Aromatic	100.0 % (10 of 10)	100.0 % (5 of 5)	100.0 % (5 of 5)
Methyl	46.7 % (14 of 30)	46.7 % (7 of 15)	46.7 % (7 of 15)

1. Inner-linker peptide

AGGAKPAPAA AEEKAAPAAA KPATTEGEFP ETREKMS

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0

#	Name	Isotope labeling	Concentration
1	Inner-linker peptide	natural abundance	1 mM
2	potassium phosphate	natural abundance	10 mM
3	DSS	natural abundance	0.01 mM
4	D2O	[U-100% 2H]	10 %
5	H2O		90 %

Release date

2008-06-25

Citation

Extended polypeptide linkers establish the spatial architecture of a pyruvate dehydrogenase multienzyme complex
Lengyel, J.S., Stott, K.M., Wu, X., Brooks, B.R., Balbo, A., Schuck, P., Perham, R.N., Subramaniam, S., Milne, J.L.S.
Structure (2008), 16, 93-103, PubMed 18184587 , DOI 10.1016/j.str.2007.10.017 , Abstract

Related entities 1. Inner-linker peptide from PDH, : 1 : 3 : 8 entities Detail

Interaction partners 1. Inner-linker peptide from PDH, : 3 interactors Detail

More details for 3 interactors identified by 3 citations

Experiments performed 3 experiments Detail

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr15612_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr15612_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chem_shift_list_1	Warning	232		70.3 (chain: 1, length: 37)
1	Chemical shift references	chemical_shift_reference_1	OK	2		No information

Assigned chemical shifts

Saveframe: assigned_chem_shift_list_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 37, Sequence coverage: 70.3%
- Total number of assignments
  - ¹H chemical shifts: 160
  - ¹³C chemical shifts: 72
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Comp_index_ID	Comp_ID	Atom_ID	CS value (ppm)
24	THR	HG1	5.151
25	THR	HG1	5.213
32	THR	HG1	5.258
37	SER	HG	5.742

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	197	140	71.1
¹³C chemical shifts	148	72	48.6

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	72	52	72.2
¹³C chemical shifts	74	21	28.4

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	125	88	70.4
¹³C chemical shifts	74	51	68.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	16	8	50.0
¹³C chemical shifts	16	8	50.0

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Found 1 Document (0.47 seconds)

BMRB: 15612

Sample

Related entities 1. Inner-linker peptide from PDH, : 1 : 3 : 8 entities Detail

Interaction partners 1. Inner-linker peptide from PDH, : 3 interactors Detail

Experiments performed 3 experiments Detail

Instrument

Sample

Instrument

Sample

Instrument

Sample

Chemical shift validation 3 contents Detail