BMRBj - BMREntryMaster

Found 1 Document (1.1 seconds)

BMRB: 15855

2KG4

NMR assignment of human Growth Arrest and DNA Damage alpha protein (Gadd45a)

Authors

Sanchez, R., Pantoja-Uceda, D., Torres, D., Prieto, J., Campos-Olivas, R., Blanco, F.

Assembly

Gadd45a

Entity

1. Gadd45a (polymer, Thiol state: all free), 168 monomers, 18626.88 Da Detail

GPHMTLEEFS AGEQKTERMD KVGDALEEVL SKALSQRTIT VGVYEAAKLL NVDPDNVVLC LLAADEDDDR DVALQIHFTL IQAFCCENDI NILRVSNPGR LAELLLLETD AGPAASEGAE QPPDLHCVLV TNPHSSQWKD PALSQLICFC RESRYMDQWV PVINLPER

Formula weight

18626.88 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

molecular dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 95.2 %, Completeness: 84.3 %, Completeness (bb): 90.8 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	84.3 % (1603 of 1901)	82.1 % (807 of 983)	86.3 % (641 of 743)	88.6 % (155 of 175)
Backbone	90.8 % (897 of 988)	90.1 % (300 of 333)	90.7 % (451 of 497)	92.4 % (146 of 158)
Sidechain	79.1 % (850 of 1074)	78.0 % (507 of 650)	82.1 % (334 of 407)	52.9 % (9 of 17)
Aromatic	68.8 % (66 of 96)	68.8 % (33 of 48)	67.4 % (31 of 46)	100.0 % (2 of 2)
Methyl	90.6 % (192 of 212)	92.5 % (98 of 106)	88.7 % (94 of 106)

1. Gadd45a

GPHMTLEEFS AGEQKTERMD KVGDALEEVL SKALSQRTIT VGVYEAAKLL NVDPDNVVLC LLAADEDDDR DVALQIHFTL IQAFCCENDI NILRVSNPGR LAELLLLETD AGPAASEGAE QPPDLHCVLV TNPHSSQWKD PALSQLICFC RESRYMDQWV PVINLPER

Show sample condition

Sample #1

Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
1	Gadd45a	[U-99% 13C; U-99% 15N]	450 uM
2	sodium phosphate	natural abundance	20 mM
3	potassium chloride	natural abundance	100 mM
4	DTT	natural abundance	2 mM
5	EDTA	natural abundance	2 mM
6	sodium azide	natural abundance	0.03 %

Sample #2

Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
7	Gadd45a	[U-99% 15N]	450 uM
8	sodium phosphate	natural abundance	20 mM
9	potassium chloride	natural abundance	100 mM
10	DTT	natural abundance	2 mM
11	EDTA	natural abundance	2 mM
12	sodium azide	natural abundance	0.03 %

Sample #3

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
13	Gadd45a	natural abundance	195 uM
14	sodium phosphate	natural abundance	20 mM
15	potassium chloride	natural abundance	100 mM
16	DTT-d10	natural abundance	2 mM
17	EDTA-d12	natural abundance	2 mM
18	sodium azide	natural abundance	0.03 %

Sample #4

Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
19	Gadd45a	[U-15N]-Leu	450 uM
20	sodium phosphate	natural abundance	20 mM
21	potassium chloride	natural abundance	100 mM
22	DTT	natural abundance	2 mM
23	EDTA	natural abundance	2 mM
24	sodium azide	natural abundance	0.03 %

Sample #5

Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
25	Gadd45a	[U-15N]-Val	450 uM
26	sodium phosphate	natural abundance	20 mM
27	potassium chloride	natural abundance	100 mM
28	DTT	natural abundance	2 mM
29	EDTA	natural abundance	2 mM
30	sodium azide	natural abundance	0.03 %

Sample #6

Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
31	Gadd45a	[U-15N]-Ile	450 uM
32	sodium phosphate	natural abundance	20 mM
33	potassium chloride	natural abundance	100 mM
34	DTT	natural abundance	2 mM
35	EDTA	natural abundance	2 mM
36	sodium azide	natural abundance	0.03 %

Sample #7

Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
37	Gadd45a	[U-15N]-Phe/Tyr	450 uM
38	sodium phosphate	natural abundance	20 mM
39	potassium chloride	natural abundance	100 mM
40	DTT	natural abundance	2 mM
41	EDTA	natural abundance	2 mM
42	sodium azide	natural abundance	0.03 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
¹³C	water	protons	4.77 ppm	internal	indirect	0.2514495
¹H	water	protons	4.77 ppm	internal	direct	1.0
¹⁵N	water	protons	4.77 ppm	internal	indirect	0.1013291

Referencing offset: -0.77 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
¹³C	water	protons	4.77 ppm	internal	indirect	0.2514495
¹H	water	protons	4.77 ppm	internal	direct	1.0
¹⁵N	water	protons	4.77 ppm	internal	indirect	0.1013291

Referencing offset: -0.77 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
¹³C	water	protons	4.77 ppm	internal	indirect	0.2514495
¹H	water	protons	4.77 ppm	internal	direct	1.0
¹⁵N	water	protons	4.77 ppm	internal	indirect	0.1013291

Referencing offset: 0.0 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
¹³C	water	protons	4.77 ppm	internal	indirect	0.2514495
¹H	water	protons	4.77 ppm	internal	direct	1.0
¹⁵N	water	protons	4.77 ppm	internal	indirect	0.1013291

Referencing offset: 0.21 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2KG4, Strand ID: A Detail

Release date

2008-07-06

Citation

NMR assignment and secondary structure of human growth arrest and DNA damage alpha protein (Gadd45 alpha)
Sanchez, R., Pantoja-Uceda, D., Torres, D., Prieto, J., Campos-Olivas, R., Blanco, F.J.
Biomol. NMR Assign. (2008), 2, 139-142, PubMed 19636889 , DOI 10.1007/s12104-008-9105-9 , Abstract

Related entities 1. Gadd45a, : 1 : 3 : 144 entities Detail

Interaction partners 1. Gadd45a, : 56 interactors Detail

More details for 56 interactors identified by 10 citations

Experiments performed 16 experiments Detail

1 2D 1H-15N HSQC

Instrument

Bruker Avance II - 800 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
7	Gadd45a	[U-99% 15N]	450 uM
8	sodium phosphate	natural abundance	20 mM
9	potassium chloride	natural abundance	100 mM
10	DTT	natural abundance	2 mM
11	EDTA	natural abundance	2 mM
12	sodium azide	natural abundance	0.03 %

2 2D 1H-13C HMQC Aliphatic

Instrument

Bruker Avance II - 800 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
1	Gadd45a	[U-99% 13C; U-99% 15N]	450 uM
2	sodium phosphate	natural abundance	20 mM
3	potassium chloride	natural abundance	100 mM
4	DTT	natural abundance	2 mM
5	EDTA	natural abundance	2 mM
6	sodium azide	natural abundance	0.03 %

3 3D HNCO

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
1	Gadd45a	[U-99% 13C; U-99% 15N]	450 uM
2	sodium phosphate	natural abundance	20 mM
3	potassium chloride	natural abundance	100 mM
4	DTT	natural abundance	2 mM
5	EDTA	natural abundance	2 mM
6	sodium azide	natural abundance	0.03 %

4 3D HNCA

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
1	Gadd45a	[U-99% 13C; U-99% 15N]	450 uM
2	sodium phosphate	natural abundance	20 mM
3	potassium chloride	natural abundance	100 mM
4	DTT	natural abundance	2 mM
5	EDTA	natural abundance	2 mM
6	sodium azide	natural abundance	0.03 %

5 3D HNCACB

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
1	Gadd45a	[U-99% 13C; U-99% 15N]	450 uM
2	sodium phosphate	natural abundance	20 mM
3	potassium chloride	natural abundance	100 mM
4	DTT	natural abundance	2 mM
5	EDTA	natural abundance	2 mM
6	sodium azide	natural abundance	0.03 %

6 3D CBCA(CO)NH

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
1	Gadd45a	[U-99% 13C; U-99% 15N]	450 uM
2	sodium phosphate	natural abundance	20 mM
3	potassium chloride	natural abundance	100 mM
4	DTT	natural abundance	2 mM
5	EDTA	natural abundance	2 mM
6	sodium azide	natural abundance	0.03 %

7 3D HN(CO)CA

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
1	Gadd45a	[U-99% 13C; U-99% 15N]	450 uM
2	sodium phosphate	natural abundance	20 mM
3	potassium chloride	natural abundance	100 mM
4	DTT	natural abundance	2 mM
5	EDTA	natural abundance	2 mM
6	sodium azide	natural abundance	0.03 %

8 3D HNHA

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
7	Gadd45a	[U-99% 15N]	450 uM
8	sodium phosphate	natural abundance	20 mM
9	potassium chloride	natural abundance	100 mM
10	DTT	natural abundance	2 mM
11	EDTA	natural abundance	2 mM
12	sodium azide	natural abundance	0.03 %

9 3D 1H-15N NOESY

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
7	Gadd45a	[U-99% 15N]	450 uM
8	sodium phosphate	natural abundance	20 mM
9	potassium chloride	natural abundance	100 mM
10	DTT	natural abundance	2 mM
11	EDTA	natural abundance	2 mM
12	sodium azide	natural abundance	0.03 %

10 2D 1H-1H NOESY

Instrument

Bruker Avance II - 900 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
13	Gadd45a	natural abundance	195 uM
14	sodium phosphate	natural abundance	20 mM
15	potassium chloride	natural abundance	100 mM
16	DTT-d10	natural abundance	2 mM
17	EDTA-d12	natural abundance	2 mM
18	sodium azide	natural abundance	0.03 %

11 2D 1H-15N HSQC

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
19	Gadd45a	[U-15N]-Leu	450 uM
20	sodium phosphate	natural abundance	20 mM
21	potassium chloride	natural abundance	100 mM
22	DTT	natural abundance	2 mM
23	EDTA	natural abundance	2 mM
24	sodium azide	natural abundance	0.03 %

12 2D 1H-15N HSQC

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
25	Gadd45a	[U-15N]-Val	450 uM
26	sodium phosphate	natural abundance	20 mM
27	potassium chloride	natural abundance	100 mM
28	DTT	natural abundance	2 mM
29	EDTA	natural abundance	2 mM
30	sodium azide	natural abundance	0.03 %

13 2D 1H-15N HSQC

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
31	Gadd45a	[U-15N]-Ile	450 uM
32	sodium phosphate	natural abundance	20 mM
33	potassium chloride	natural abundance	100 mM
34	DTT	natural abundance	2 mM
35	EDTA	natural abundance	2 mM
36	sodium azide	natural abundance	0.03 %

14 2D 1H-15N HSQC

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
37	Gadd45a	[U-15N]-Phe/Tyr	450 uM
38	sodium phosphate	natural abundance	20 mM
39	potassium chloride	natural abundance	100 mM
40	DTT	natural abundance	2 mM
41	EDTA	natural abundance	2 mM
42	sodium azide	natural abundance	0.03 %

15 4D 1H-15N 1H13C NOESY

Instrument

Bruker Avance - 600 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
1	Gadd45a	[U-99% 13C; U-99% 15N]	450 uM
2	sodium phosphate	natural abundance	20 mM
3	potassium chloride	natural abundance	100 mM
4	DTT	natural abundance	2 mM
5	EDTA	natural abundance	2 mM
6	sodium azide	natural abundance	0.03 %

16 2D 1H-13C HMQC Aromatic

Instrument

Bruker Avance II - 800 MHz TXI Cryprobe

Sample

State isotropic, Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 7.4

#	Name	Isotope labeling	Concentration
1	Gadd45a	[U-99% 13C; U-99% 15N]	450 uM
2	sodium phosphate	natural abundance	20 mM
3	potassium chloride	natural abundance	100 mM
4	DTT	natural abundance	2 mM
5	EDTA	natural abundance	2 mM
6	sodium azide	natural abundance	0.03 %

nullKeywords DNA damage, Gadd45, growth arrest, NMR assignment, selective labeling

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Found 1 Document (1.1 seconds)

BMRB: 15855

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Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. Gadd45a, : 1 : 3 : 144 entities Detail

Interaction partners 1. Gadd45a, : 56 interactors Detail

Experiments performed 16 experiments Detail

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