BMRBj - BMREntryMaster

Found 1 Document (0.58 seconds)

BMRB: 16493

3OJM

Backbone and side chain 1H chemical shift assignments for acidic fibrobast growth factor bound to inositol hexasulfate

Authors

Pineda-Lucena, A., Jimenez, M., Nieto, J.L., Santoro, J., Rico, M., Gimenez-Gallego, G.

Assembly

aFGF/MIHS complex

Entity

1. aFGF (polymer, Thiol state: all free), 132 monomers, 14932.68 Da Detail

KKPKLLYCSN GGHFLRILPD GTVDGTRDRS DQHIQLQLSA ESVGEVYIKS TETGQYLAMD TDGLLYGSQT PNEECLFLER LEENHYNTYI SKKHAEKNWF VGLKKNGSCK RGPRTHYGQK AILFLPLPVS SD

2. IHS (non-polymer, Thiol state: not present), 660.535 Da

Total weight

15593.215 Da

Max. entity weight

14932.68 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 91.5 %, Completeness (bb): 97.8 % Detail

Polymer type: polypeptide(L)

	Total	¹H
All	91.5 % (746 of 815)	91.5 % (746 of 815)
Backbone	97.8 % (264 of 270)	97.8 % (264 of 270)
Sidechain	88.4 % (482 of 545)	88.4 % (482 of 545)
Aromatic	92.2 % (59 of 64)	92.2 % (59 of 64)
Methyl	92.2 % (59 of 64)	92.2 % (59 of 64)

1. aFGF

KKPKLLYCSN GGHFLRILPD GTVDGTRDRS DQHIQLQLSA ESVGEVYIKS TETGQYLAMD TDGLLYGSQT PNEECLFLER LEENHYNTYI SKKHAEKNWF VGLKKNGSCK RGPRTHYGQK AILFLPLPVS SD

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6

#	Name	Isotope labeling	Concentration
1	aFGF	natural abundance	1.0 ~ 2.0 mM
2	MIHS	natural abundance	1.0 ~ 2.0 mM
3	sodium phosphate	natural abundance	10 mM
4	TSP	natural abundance	0.1 ~ 0.2 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6

#	Name	Isotope labeling	Concentration
7	aFGF	natural abundance	1.0 ~ 2.0 mM
8	MIHS	natural abundance	1.0 ~ 2.0 mM
9	sodium phosphate	natural abundance	10 mM
10	TSP	natural abundance	0.1 ~ 0.2 mM
11	D2O	natural abundance	100 %

Release date

2009-09-14

Citation 1

1H-NMR assignment and solution structure of human acidic fibroblast growth factor activated by inositol hexasulfate
Pineda-Lucena, A., Jimenez, M., Nieto, J.L., Santoro, J., Rico, M., Gimenez-Gallego, G.
J. Mol. Biol. (1994), 242, 81-98, PubMed 7521397 , DOI 10.1006/jmbi.1994.1558 , Abstract

Show more 1 citaion

Citation 2

Three-dimensional structure of acidic fibroblast growth factor in solution: effects of binding to a heparin functional analog
Pineda-Lucena, A., Jimenez, M., Lozano, R.M., Nieto, J.L., Santoro, J., Rico, M., Gimenez-Gallego, G.
J. Mol. Biol. (1996), 264, 162-178, PubMed 8950275 , DOI 10.1006/jmbi.1996.0631 , Abstract

Hide non-primary 1 citaion

Related entities 1. aFGF, : 1 : 25 : 7 : 52 : 188 entities Detail

Interaction partners 1. aFGF, : 9 interactors Detail

More details for 9 interactors identified by 8 citations

Experiments performed 9 experiments Detail

1 2D 1H-1H COSY

Instrument

Bruker AMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6

#	Name	Isotope labeling	Concentration
1	aFGF	natural abundance	1.0 ~ 2.0 mM
2	MIHS	natural abundance	1.0 ~ 2.0 mM
3	sodium phosphate	natural abundance	10 mM
4	TSP	natural abundance	0.1 ~ 0.2 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

2 2D 1H-1H TOCSY

Instrument

Bruker AMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6

#	Name	Isotope labeling	Concentration
1	aFGF	natural abundance	1.0 ~ 2.0 mM
2	MIHS	natural abundance	1.0 ~ 2.0 mM
3	sodium phosphate	natural abundance	10 mM
4	TSP	natural abundance	0.1 ~ 0.2 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

3 2D 1H-1H NOESY

Instrument

Bruker AMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6

#	Name	Isotope labeling	Concentration
1	aFGF	natural abundance	1.0 ~ 2.0 mM
2	MIHS	natural abundance	1.0 ~ 2.0 mM
3	sodium phosphate	natural abundance	10 mM
4	TSP	natural abundance	0.1 ~ 0.2 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

4 2D 1H-1H COSY

Instrument

Bruker AMX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6

#	Name	Isotope labeling	Concentration
7	aFGF	natural abundance	1.0 ~ 2.0 mM
8	MIHS	natural abundance	1.0 ~ 2.0 mM
9	sodium phosphate	natural abundance	10 mM
10	TSP	natural abundance	0.1 ~ 0.2 mM
11	D2O	natural abundance	100 %

5 2D 1H-1H TOCSY

Instrument

Bruker AMX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6

#	Name	Isotope labeling	Concentration
7	aFGF	natural abundance	1.0 ~ 2.0 mM
8	MIHS	natural abundance	1.0 ~ 2.0 mM
9	sodium phosphate	natural abundance	10 mM
10	TSP	natural abundance	0.1 ~ 0.2 mM
11	D2O	natural abundance	100 %

6 2D 1H-1H NOESY

Instrument

Bruker AMX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6

#	Name	Isotope labeling	Concentration
7	aFGF	natural abundance	1.0 ~ 2.0 mM
8	MIHS	natural abundance	1.0 ~ 2.0 mM
9	sodium phosphate	natural abundance	10 mM
10	TSP	natural abundance	0.1 ~ 0.2 mM
11	D2O	natural abundance	100 %

7 2D 1H-1H COSY

Instrument

Bruker AMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 308 K, pH 6

#	Name	Isotope labeling	Concentration
1	aFGF	natural abundance	1.0 ~ 2.0 mM
2	MIHS	natural abundance	1.0 ~ 2.0 mM
3	sodium phosphate	natural abundance	10 mM
4	TSP	natural abundance	0.1 ~ 0.2 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

8 2D 1H-1H TOCSY

Instrument

Bruker AMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 308 K, pH 6

#	Name	Isotope labeling	Concentration
1	aFGF	natural abundance	1.0 ~ 2.0 mM
2	MIHS	natural abundance	1.0 ~ 2.0 mM
3	sodium phosphate	natural abundance	10 mM
4	TSP	natural abundance	0.1 ~ 0.2 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

9 2D 1H-1H NOESY

Instrument

Bruker AMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 308 K, pH 6

#	Name	Isotope labeling	Concentration
1	aFGF	natural abundance	1.0 ~ 2.0 mM
2	MIHS	natural abundance	1.0 ~ 2.0 mM
3	sodium phosphate	natural abundance	10 mM
4	TSP	natural abundance	0.1 ~ 0.2 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

Chemical shift validation 4 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr16493_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr16493_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chem_shift_list_1	Warning	873		100.0 (chain: 1, length: 132)
1	Chemical shift references	chemical_shift_reference_1	OK	1		No information

Assigned chemical shifts

Saveframe: assigned_chem_shift_list_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 132, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 873
- Completeness of assignments
  - Entity_assemble_ID: 1
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Comp_index_ID	Comp_ID	Atom_ID	CS value (ppm)
4	LYS	HZ1	6.9
4	LYS	HZ2	6.9
4	LYS	HZ3	6.9
13	HIS	HD1	6.47
13	HIS	HE2	7.68
33	HIS	HD1	7.19
33	HIS	HE2	8.16
105	LYS	HZ1	6.43
105	LYS	HZ2	6.43
105	LYS	HZ3	6.43
115	THR	HG1	6.24

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	815	744	91.3

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	270	264	97.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	545	480	88.1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	65	59	90.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	64	59	92.2

Keywords acidic fibroblast growth factor, heparin, FGF activation, heparin functional analog, mitogenic activity regulation

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Found 1 Document (0.58 seconds)

BMRB: 16493

Sample #1

Sample #2

Related entities 1. aFGF, : 1 : 25 : 7 : 52 : 188 entities Detail

Interaction partners 1. aFGF, : 9 interactors Detail

Experiments performed 9 experiments Detail

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Chemical shift validation 4 contents Detail