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BMRB: 17157

2L30

DNA repair protein zinc finger 1

Authors

Neuhaus, D., Eustermann, S., Yang, J., Videler, H.

Assembly

PARP-1 Finger 1

Entity

1. PARP-1 Finger 1 (polymer, Thiol state: all other bound), 108 monomers, 12110.61 Da Detail

MAESSDKLYR VEYAKSGRAS CKKCSESIPK DSLRMAIMVQ SPMFDGKVPH WYHFSCFWKV GHSIRHPDVE VDGFSELRWD DQQKVKKTAE AGGVTGKGQD GIGSKAEK

2. ZN (non-polymer), 65.409 Da

Total weight

12176.02 Da

Max. entity weight

12110.61 Da

Entity Connection

na 4 Detail

ID	Type	Value order	Atom ID 1	Atom ID 2
1	na	sing	1:CYS21:SG	2:ZN1:ZN
2	na	sing	1:CYS24:SG	2:ZN1:ZN
3	na	sing	1:HIS53:ND1	2:ZN1:ZN
4	na	sing	1:CYS56:SG	2:ZN1:ZN

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 97.2 %, Completeness: 88.3 %, Completeness (bb): 83.3 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	88.3 % (1107 of 1254)	94.7 % (624 of 659)	78.3 % (379 of 484)	93.7 % (104 of 111)
Backbone	83.3 % (533 of 640)	97.3 % (216 of 222)	68.8 % (216 of 314)	97.1 % (101 of 104)
Sidechain	94.0 % (669 of 712)	93.4 % (408 of 437)	96.3 % (258 of 268)	42.9 % (3 of 7)
Aromatic	100.0 % (116 of 116)	100.0 % (58 of 58)	100.0 % (55 of 55)	100.0 % (3 of 3)
Methyl	97.4 % (76 of 78)	97.4 % (38 of 39)	97.4 % (38 of 39)

1. PARP-1 Finger 1

MAESSDKLYR VEYAKSGRAS CKKCSESIPK DSLRMAIMVQ SPMFDGKVPH WYHFSCFWKV GHSIRHPDVE VDGFSELRWD DQQKVKKTAE AGGVTGKGQD GIGSKAEK

Show sample condition

Sample

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 300 K, pH 7.0

#	Name	Isotope labeling	Concentration
1	PARP-1 Finger 1	[U-98% 15N; U-98% 13C]	0.5 ~ 1.0 mM
2	TRIS	[U-99% 2H]	50 mM
3	sodium chloride	natural abundance	200 mM
4	zinc sulfate	natural abundance	150 uM
5	DTT	[U-99% 2H]	4 mM
6	H2O	natural abundance	95 %
7	D2O	natural abundance	5 %
8	TRIS	[U-99% 2H]	50 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	TSP	methyl protons	external	indirect	0.2514495
¹H	TSP	methyl protons	external	direct	1.0
¹⁵N	TSP	methyl protons	external	indirect	0.1013291

Referencing offset: 0.14 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	TSP	methyl protons	external	indirect	0.2514495
¹H	TSP	methyl protons	external	direct	1.0
¹⁵N	TSP	methyl protons	external	indirect	0.1013291

Referencing offset: 0.14 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	TSP	methyl protons	external	indirect	0.2514495
¹H	TSP	methyl protons	external	direct	1.0
¹⁵N	TSP	methyl protons	external	indirect	0.1013291

Referencing offset: -0.05 ppm, Outliers: 2 Detail

Protein Blocks Logo

Calculated from 30 models in PDB: 2L30, Strand ID: A Detail

Release date

2011-01-26

Citation

The DNA-binding domain of human PARP-1 interacts with DNA single-strand breaks as a monomer through its second zinc finger
Eustermann, S., Videler, H., Yang, J., Cole, P.T., Gruszka, D., Veprintsev, D., Neuhaus, D.
J. Mol. Biol. (2011), 407, 149-170, PubMed 21262234 , DOI 10.1016/j.jmb.2011.01.034 , Abstract

Entries sharing articles BMRB: 1 entries Detail

BMRB: 17158 released on 2011-01-26
Title DNA repair protein zinc finger 2

Related entities 1. PARP-1 Finger 1, : 1 : 3 : 7 : 44 entities Detail

Interaction partners 1. PARP-1 Finger 1, : 182 interactors Detail

More details for 182 interactors identified by 72 citations

Experiments performed 14 experiments Detail

1 2D 1H-15N HSQC