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BMRB: 17756

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Backbone 1H and 13C Chemical Shift Assignments of human prion protein (residues 121-230) in its oxidized state

Authors

Schwalbe, H.

Assembly

human prion protein (residues 121-230)

Entity

1. human prion protein (residues 121-230) (polymer, Thiol state: all disulfide bound), 113 monomers, 13326.72 Da Detail

GHMVVGGLGG YMLGSAMSRP IIHFGSDYED RYYRENMHRY PNQVYYRPMD EYSNQNNFVH DCVNITIKQH TVTTTTKGEN FTETDVKMME RVVEQMCITQ YERESQAYYQ RGS

Formula weight

13326.72 Da

Entity Connection

disulfide 1 Detail

ID	Type	Value order	Atom ID 1	Atom ID 2
1	disulfide	sing	1:CYS62:SG	1:CYS97:SG

Source organism

Homo sapiens

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 90.3 %, Completeness: 37.0 %, Completeness (bb): 77.8 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C
All	37.0 % (444 of 1201)	26.8 % (185 of 691)	50.8 % (259 of 510)
Backbone	77.8 % (437 of 562)	77.2 % (179 of 232)	78.2 % (258 of 330)
Sidechain	11.7 % (87 of 743)	1.3 % (6 of 459)	28.5 % (81 of 284)
Aromatic	0.0 % (0 of 138)	0.0 % (0 of 69)	0.0 % (0 of 69)
Methyl	3.5 % (3 of 86)	2.3 % (1 of 43)	4.7 % (2 of 43)

1. hPrP(121-230)

GHMVVGGLGG YMLGSAMSRP IIHFGSDYED RYYRENMHRY PNQVYYRPMD EYSNQNNFVH DCVNITIKQH TVTTTTKGEN FTETDVKMME RVVEQMCITQ YERESQAYYQ RGS

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 2.0, Details 8M urea pH 2

#	Name	Isotope labeling	Concentration
1	hPrP(121-230)	[U-13C; U-15N]	0.2 ~ 0.5 mM
2	TSP	natural abundance	1 mM
3	urea	natural abundance	8 M
4	H2O	natural abundance	90 %
5	D2O	natural abundance	10 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
¹³C	TSP	methyl protons	0.0 ppm	internal	indirect	0.2514495
¹H	TSP	methyl protons	0.0 ppm	internal	direct	1.0

Referencing offset: -0.12 ppm, Outliers: 2 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
¹³C	TSP	methyl protons	0.0 ppm	internal	indirect	0.2514495
¹H	TSP	methyl protons	0.0 ppm	internal	direct	1.0

Referencing offset: -0.12 ppm, Outliers: 2 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
¹³C	TSP	methyl protons	0.0 ppm	internal	indirect	0.2514495
¹H	TSP	methyl protons	0.0 ppm	internal	direct	1.0

Referencing offset: 0.0 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
¹³C	TSP	methyl protons	0.0 ppm	internal	indirect	0.2514495
¹H	TSP	methyl protons	0.0 ppm	internal	direct	1.0

Referencing offset: 0.33 ppm, Outliers: 2 Detail

Release date

2011-07-17

Citation

Unfolded-state structure and dynamics influence the fibril formation of human prion protein
Gerum, C., Silvers, R., Wirmer-Bartoschek, J., Schwalbe, H.
Angew. Chem Int Ed Engl. (2009), 48, 9452-9456, PubMed 19882604 , DOI 10.1002/anie.200903771 , Abstract

Related entities 1. human prion protein (residues 121-230), : 1 : 25 : 136 entities Detail

Interaction partners 1. human prion protein (residues 121-230), : 70 interactors Detail

More details for 70 interactors identified by 14 citations

Experiments performed 7 experiments Detail

1 2D 1H-15N HSQC