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BMRB: 17808

2LGG

Structure of PHD domain of UHRF1 in complex with H3 peptide

Authors

Wang, C., Shen, J., Yang, Z.

Assembly

Structure of PHD domain of UHRF1 in complex with H3 peptide

Entity

1. E3 ubiquitin-protein ligase UHRF1 (polymer, Thiol state: all other bound), 69 monomers, 7839.816 Da Detail

SGPSCKHCKD DVNRLCRVCA CHLCGGRQDP DKQLMCDECD MAFHIYCLDP PLSSVPSEDE WYCPECRND

2. Structure of PHD domain of UHRF1 in complex with H3 peptide, entity 2 (polymer), 11 monomers, 1247.403 Da Detail

ARTKQTARKS T

3. ZN (non-polymer), 65.409 × 3 Da

Total weight

9283.445 Da

Max. entity weight

7839.816 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 98.8 %, Completeness: 82.3 %, Completeness (bb): 87.2 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	82.3 % (728 of 885)	88.0 % (411 of 467)	74.6 % (252 of 338)	81.3 % (65 of 80)
Backbone	87.2 % (408 of 468)	96.8 % (152 of 157)	81.9 % (194 of 237)	83.8 % (62 of 74)
Sidechain	77.9 % (385 of 494)	83.5 % (259 of 310)	69.1 % (123 of 178)	50.0 % (3 of 6)
Aromatic	56.0 % (28 of 50)	64.0 % (16 of 25)	50.0 % (12 of 24)	0.0 % (0 of 1)
Methyl	88.0 % (44 of 50)	96.0 % (24 of 25)	80.0 % (20 of 25)

1. E3 ubiquitin-protein ligase UHRF1

SGPSCKHCKD DVNRLCRVCA CHLCGGRQDP DKQLMCDECD MAFHIYCLDP PLSSVPSEDE WYCPECRND

2. entity 2

ARTKQTARKS T

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 293 K, pH 7.4

#	Name	Isotope labeling	Concentration
1	entity_1	[U-100% 13C; U-100% 15N]	1 mM
2	H20	natural abundance	1 mM
3	D2O	natural abundance	1 mM
4	phosphate	natural abundance	1 mM
5	NaCl	natural abundance	1 mM
6	KCl	natural abundance	1 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.38 ppm, Outliers: 3 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.38 ppm, Outliers: 3 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.0 ppm, Outliers: 3 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.48 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2LGG, Strand ID: A, B Detail

Release date

2011-12-11

Citation

Structural basis for site-specific reading of unmodified R2 of histone H3 tail by UHRF1 PHD finger
Wang, C., Shen, J., Yang, Z., Chen, P., Zhao, B., Hu, W., Lan, W., Tong, X., Wu, H., Li, G., Cao, C.
Cell Res. (2011), 21, 1379-1382, PubMed 21808299 , DOI 10.1038/cr.2011.123 , Abstract

Related entities 1. E3 ubiquitin-protein ligase UHRF1, : 2 : 38 entities Detail

Experiments performed 9 experiments Detail

1 2D 1H-15N HSQC