Search

HIV-1 capsid protein major homology region peptide analog
Authors
Clish, C.B., Peyton, D.H., Barklis, E.
Assembly
HIV-1 capsid
Entity
1. HIV-1 capsid (polymer, Thiol state: not reported), 31 monomers, 3703.145 Da Detail

CSILDIRQGP KEPFRDYVDR FYKTLRAEQA S


Formula weight
3703.145 Da
Source organism
Homo sapiens
Exptl. method
NMR
Refine. method
DISTANCE GEOMETRY
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 96.8 %, Completeness: 76.2 %, Completeness (bb): 93.3 % Detail

Polymer type: polypeptide(L)

Total1H
All76.2 % (154 of 202)76.2 % (154 of 202)
Backbone93.3 % (56 of 60)93.3 % (56 of 60)
Sidechain69.0 % (98 of 142)69.0 % (98 of 142)
Aromatic38.9 % (7 of 18)38.9 % (7 of 18)
Methyl92.3 % (12 of 13)92.3 % (12 of 13)

1. HIV-1 capsid

CSILDIRQGP KEPFRDYVDR FYKTLRAEQA S

Sample

Temperature 298 K, pH 3.1


#NameIsotope labelingTypeConcentration
1HIV-1 capsid5.0 ~ 7.0 mM
2H2O90 %
3D2O10 %

Protein Blocks Logo
Calculated from 8 models in PDB: 1BMX, Strand ID: A Detail


Release date
2000-04-06
Citation
Solution structures of human immunodeficiency virus type 1 (HIV-1) and moloney murine leukemia virus (MoMLV) capsid protein major-homology-region peptide analogs by NMR spectroscopy
Clish, C.B., Peyton, D.H., Barklis, E.
Eur. J. Biochem. (1998), 257, 69-77, PubMed 9799104 , DOI 10.1046/j.1432-1327.1998.2570069.x ,
Related entities 1. HIV-1 capsid, : 1 : 130 : 69 entities Detail
Interaction partners 1. HIV-1 capsid, : 2 interactors Detail
Experiments performed 3 experiments Detail
Keywords Capsid, HIV, major homology region, MHR, P24