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BMRB: 4478


4478
1B4R
PKD domain 1 from Human polycystein-1
Authors
Bycroft, M.
Assembly
PKD1 HUMAN
Entity
1. PKD1 HUMAN (polymer, Thiol state: not present), 91 monomers, 8924.910 Da Detail

GSVFPASPGA TLVGPHGPLA SGQLAAFHIA APLPVTATRW DFGDGSAEVD AAGPAASHRY VLPGRYHVTA VLALGAGSAL LGTDVQVEAA P


Formula weight
8924.91 Da
Source organism
Homo sapiens
Exptl. method
NMR
Refine. method
SA
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 96.7 %, Completeness: 74.4 %, Completeness (bb): 78.2 % Detail
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Polymer type: polypeptide(L)

Total1H13C15N
All74.4 % (689 of 926)89.2 % (413 of 463)51.6 % (195 of 378)95.3 % (81 of 85)
Backbone78.2 % (413 of 528)95.7 % (177 of 185)59.8 % (156 of 261)97.6 % (80 of 82)
Sidechain72.3 % (345 of 477)84.9 % (236 of 278)55.1 % (108 of 196)33.3 % (1 of 3)
Aromatic43.2 % (32 of 74)83.8 % (31 of 37) 0.0 % (0 of 36)100.0 % (1 of 1)
Methyl82.3 % (102 of 124)91.9 % (57 of 62)72.6 % (45 of 62)

1. PKD1 HUMAN

GSVFPASPGA TLVGPHGPLA SGQLAAFHIA APLPVTATRW DFGDGSAEVD AAGPAASHRY VLPGRYHVTA VLALGAGSAL LGTDVQVEAA P

Show sample condition
Sample

Temperature 298 K, pH 3.0


#NameIsotope labelingTypeConcentration
1PKD1 HUMAN[U-13C; U-15N]1.0 ~ 3.0 mM
2acetate buffer[U-2H]0.0 ~ 0.0 mM

LACS Plot; CA
Referencing offset: 2.85 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: 2.85 ppm, Outliers: 1 Detail
LACS Plot; HA
Referencing offset: -0.05 ppm, Outliers: 3 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 1B4R, Strand ID: A Detail

Release date
2000-05-24
Citation
The Structure of a PKD Domain from Polycystin-1: Implications for Polycystic Kidney Diseas
Bycroft, M., Bateman, A., Clarke, J., Hamill, S.J., Sandford, R., Thomas, R.L., Chothia, C.
EMBO J. (1999), 18, 297-305, PubMed , DOI:
Related entities 1. PKD1 HUMAN, : 1 : 1 : 1 entities Detail
More details for 3 related entities
Interaction partners 1. PKD1 HUMAN, : 2 interactors Detail
More details for 2 interactors identified by 2 citations
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