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Assignment of 1H,13C and 15N signals of Bovine Adrenodoxin
Authors
Weiss, R., Brachais, L., Loehr, F., Hartleib, J., Bernhardt, R., Rueterjans, H.
Assembly
bovine adrenodoxin
Entity
1. bovine adrenodoxin (polymer, Thiol state: free and other bound), 128 monomers, 14047.64 Da Detail

SSSEDKITVH FINRDGETLT TKGKIGDSLL DVVVQNNLDI DGFGACEGTL ACSTCHLIFE QHIFEKLEAI TDEENDMLDL AYGLTDRSRL GCQICLTKAM DNMTVRVPDA VSDARESIDM GMNSSKIE


2. FES (non-polymer), 175.820 Da
Total weight
14223.46 Da
Max. entity weight
14047.64 Da
Source organism
Escherichia coli
Exptl. method
NMR
Refine. method
distance geometry, simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 85.2 %, Completeness: 73.9 %, Completeness (bb): 80.8 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All73.9 % (1039 of 1406)70.5 % (509 of 722)77.0 % (422 of 548)79.4 % (108 of 136)
Backbone80.8 % (619 of 766)81.4 % (215 of 264)80.8 % (303 of 375)79.5 % (101 of 127)
Sidechain68.4 % (519 of 759)64.2 % (294 of 458)74.7 % (218 of 292)77.8 % (7 of 9)
Aromatic 0.0 % (0 of 60) 0.0 % (0 of 30) 0.0 % (0 of 30)
Methyl80.0 % (120 of 150)78.7 % (59 of 75)81.3 % (61 of 75)

1. bovine adrenodoxin

SSSEDKITVH FINRDGETLT TKGKIGDSLL DVVVQNNLDI DGFGACEGTL ACSTCHLIFE QHIFEKLEAI TDEENDMLDL AYGLTDRSRL GCQICLTKAM DNMTVRVPDA VSDARESIDM GMNSSKIE

Sample #1

Temperature 300 (±1) K, pH 7.4 (±0.2), Details Every sample was fully 15N,13C labeled, only for definite experiments we used a only 15N-labeled sample (TOCSY-15N-HSQC;NOESY-15N-HSQC;HNHB). For each NMR experiment a new sample was neccessary. So we did approximatly 17 samples for the oxidized state. 1 to 5 mM oxydized Adx samples were obtained from E. coli and purified as described elsewhere [8]. For 15N-labelled samples, 15NH4CL was used and for 13C-labelled samples, both 13C6-glucose and 13C3-glycerol were introduced into the growth medium. Purity of the protein was checked by measuring A414/A290>0.9 in Tris/HCl (50mM, pH=7.4) buffer.


#NameIsotope labelingTypeConcentration
1bovine adrenodoxin[U-100% 13C; U-100% 15N]1.0 ~ 4.0 mM
2D2O5 %
Sample #2

Temperature 300 (±1) K, pH 7.4 (±0.2), Details Every sample was fully 15N,13C labeled, only for definite experiments we used a only 15N-labeled sample (TOCSY-15N-HSQC;NOESY-15N-HSQC;HNHB). For each NMR experiment a new sample was neccessary. So we did approximatly 17 samples for the oxidized state. 1 to 5 mM oxydized Adx samples were obtained from E. coli and purified as described elsewhere [8]. For 15N-labelled samples, 15NH4CL was used and for 13C-labelled samples, both 13C6-glucose and 13C3-glycerol were introduced into the growth medium. Purity of the protein was checked by measuring A414/A290>0.9 in Tris/HCl (50mM, pH=7.4) buffer.


#NameIsotope labelingTypeConcentration
3bovine adrenodoxin[U-100% 15N]1.0 ~ 4.0 mM
4D2O5 %

LACS Plot; CA
Referencing offset: 0.63 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: 0.63 ppm, Outliers: 1 Detail
LACS Plot; HA
Referencing offset: 0.08 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.07 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 10 models in PDB: 1L6U, Strand ID: A Detail


Release date
2000-09-24
Citation 1
Assignment of 1H, 13C and 15N signals of bovine adrenodoxin
Weiss, R., Brachais, L., Lohr, F., Hartleib, J., Bernhardt, R., Rueterjans, H.
J. Biomol. NMR (2000), 17, 355-356, PubMed 11014602 , DOI: ,
Citation 2
AN IRON PROTEIN AS A COMPONENT OF STEROID 11-BETA-HYDROXYLASE COMPLEX
SUZUKI, K., KIMURA, T.
Biochem. Biophys. Res. Commun. (1965), 19, 340-345, PubMed 14317399 , DOI: ,
Citation 3
The presence of an adrenodoxin-like ferredoxin and cytochrome P-450 in brain mitochondria
Oftebro, H., Stormer, F.C., Pedersen, J.L.
J. Biol. Chem. (1979), 254, 4331-4334, PubMed 438190 , DOI: ,
Citation 4
Side chain hydroxylation of C27-steroids and vitamin D3 by a cytochrome P-450 enzyme system isolated from human liver mitochondria
Oftebro, H., Saarem, K., Borkhem, I., Pedersen, J.I.
J. Lipid Res. (1981), 22, 1254-1264, PubMed 6274987 , DOI: ,
Citation 5
Isolation of rat liver mitochondrial ferredoxin and its reductase active in the 5beta-cholestane-3alpha, 7alpha, 12alpha-triol 26-hydroxylase
Atsuta, Y., Okuda, K.
J. Biol. Chem. (1978), 253, 4653-4658, PubMed 207706 , DOI: ,
Citation 6
Purification and biochemical characterization of hepatic ferredoxin (hepatoredoxin) from bovine liver mitochondria
Waki, N., Hiwatashi, A., Ichikawa, Y.
FEBS Lett. (1986), 195, 87-91, PubMed 3080335 , DOI: ,
Citation 7
Purification and characterization of human placental ferredoxin
Coghlan, V.M., Cupp, J.R., Vickery, L.E.
Arch. Biochem. Biophys. (1988), 264, 376-382, PubMed 3401007 , DOI: ,
Citation 8
Expression of bovine adrenodoxin in E. coli and site-directed mutagenesis of /2 Fe-2S/ cluster ligands
Uhlmann, H., Beckert, V., Schwarz, D., Bernhardt, R.
Biochem. Biophys. Res. Commun. (1992), 188, 1131-1138, PubMed 1332711 , DOI: ,
Citation 9
New aspects of electron transfer revealed by the crystal structure of a truncated bovine adrenodoxin, Adx(4-108)
Muller, A., Muller, J.J., Muller, Y.A., Uhlmann, H., Bernhardt, R., Heinemann, U.
Structure (1998), 6, 269-280, PubMed 9551550 , DOI: ,
Citation 10
1H, 13C and 15N chemical shift referencing in biomolecular NMR
Wishart, D.S., Bigam, C.G., Yao, J., Abildgaard, F., Dyson, H.J., Oldfield, E., Markley, J.L., Sykes, B.D.
J. Biomol. NMR (1995), 6, 135-140, PubMed 8589602 ,
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    Title GCSH_BOVIN Entity Glycine cleavage system H protein, mitochondrial
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    Title ADX_BOVIN Entity Adrenodoxin, mitochondrial
Related entities 1. bovine adrenodoxin, : 1 : 2 : 1 : 5 : 78 entities Detail
Interaction partners 1. bovine adrenodoxin, : 2 interactors Detail
Experiments performed 13 experiments Detail
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