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1H, 13C, and 15N Chemical Shift Assignments for Ribosomal Protein S4 delta 41
Authors
Markus, M.A., Gerstner, R.B., Draper, D.E., Torchia, D.A.
Assembly
RIBOSOMAL PROTEIN S4 DELTA 41
Entity
1. RIBOSOMAL PROTEIN S4 DELTA 41 (polymer, Thiol state: not present), 159 monomers, 18594.10 Da Detail

MKLSEYGLQL QEKQKLRHMY GVNERQFRKT FEEAGKMPGK HGENFMILLE SRLDNLVYRL GLARTRRQAR QLVTHGHILV DGSRVNIPSY RVKPGQTIAV REKSRNLQVI KEALEANNYI PDYLSFDPEK MEGTYTRLPE RSELPAEINE ALIVEFYSR


Formula weight
18594.1 Da
Source organism
Geobacillus stearothermophilus
Exptl. method
NMR
Refine. method
hybrid DGSA protocol without the dipolar coupling restraints followed by additional SA with the dipolar coupling restraints add
Data set
assigned_chemical_shifts, coupling_constants
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 91.8 %, Completeness (bb): 98.3 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All91.8 % (1781 of 1941)88.9 % (914 of 1028)94.0 % (700 of 745)99.4 % (167 of 168)
Backbone98.3 % (924 of 940)98.4 % (316 of 321)97.9 % (457 of 467)99.3 % (151 of 152)
Sidechain87.4 % (1005 of 1150)84.6 % (598 of 707)91.6 % (391 of 427)100.0 % (16 of 16)
Aromatic61.5 % (80 of 130)63.1 % (41 of 65)60.0 % (39 of 65)
Methyl96.4 % (162 of 168)96.4 % (81 of 84)96.4 % (81 of 84)

1. RIBOSOMAL PROTEIN S4 DELTA 41

MKLSEYGLQL QEKQKLRHMY GVNERQFRKT FEEAGKMPGK HGENFMILLE SRLDNLVYRL GLARTRRQAR QLVTHGHILV DGSRVNIPSY RVKPGQTIAV REKSRNLQVI KEALEANNYI PDYLSFDPEK MEGTYTRLPE RSELPAEINE ALIVEFYSR

Sample #1

Pressure 1 atm, Temperature 310 (±0.5) K, pH 5.4 (±0.1)


#NameIsotope labelingTypeConcentration
1RIBOSOMAL PROTEIN S4 DELTA 41[U-15N]0.800 mM
2deuterated acetate20 mM
3KCl250 mM
4sodium azide0.1 mM
Sample #2

Pressure 1 atm, Temperature 310 (±0.5) K, pH 5.4 (±0.1)


#NameIsotope labelingTypeConcentration
5RIBOSOMAL PROTEIN S4 DELTA 41[U-15N; U-13C]1.1 mM
6D2O6 %
7deuterated acetate20 mM
8KCl250 mM
9sodium azide0.1 mM
Sample #3

Pressure 1 atm, Temperature 310 (±0.5) K, pH 5.4 (±0.1)


#NameIsotope labelingTypeConcentration
10RIBOSOMAL PROTEIN S4 DELTA 41[U-15N; U-13C]1.1 mM
11D2O99.9 %
12deuterated acetate20 mM
13KCl250 mM
14sodium azide0.1 mM
Sample #4

Pressure 1 atm, Temperature 310 (±0.5) K, pH 5.4 (±0.1)


#NameIsotope labelingTypeConcentration
15RIBOSOMAL PROTEIN S4 DELTA 41[U-15N]0.100 mM
163:1 DMPC:DHPC0.0 ~ 0.0 na
17KH2PO410 mM
18sodium azide0.1 mM
19D2O7 %
Sample #5

Pressure 1 atm, Temperature 310 (±0.5) K, pH 5.4 (±0.1), Details residue specific labelling as follows: proline: deuterated at beta, gamma, and delta positions; methionine: uniformly 15N and 13C labelled (also protonated); tyrosine: 13C labelled at the epsilon position of the ring (also protonated)


#NameIsotope labelingTypeConcentration
20RIBOSOMAL PROTEIN S4 DELTA 41[U-15N; U-85% 2H], [U-13C]-MET, [13C, CE]-TYR0.214 mM
21Pf1 phage2.5 mg/mL
22KH2PO410 mM
23KCl300 mM
24sodium azide0.2 mM
25D2O6 %

LACS Plot; CA
Referencing offset: -0.26 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.26 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: -0.04 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: -0.15 ppm, Outliers: 3 Detail
Protein Blocks Logo
Calculated from 1 models in PDB: 1C05, Strand ID: A Detail


Coupling constant
113 J values in 1 lists
Pressure 1 atm, Temperature 310 (±0.5) K, pH 5.4 (±0.1) Detail
Release date
2000-03-05
Citation 1
The solution structure of ribosomal protein S4 delta41 reveals two subdomains and a positively charged surface that may interact with RNA
Markus, M.A., Gerstner, R.B., Draper, D.E., Torchia, D.A.
EMBO J. (1998), 17, 4559-4571, PubMed , DOI:
Citation 2
Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases
Markus, M.A., Gerstner, R.B., Draper, D.E., Torchia, D.A.
J. Mol. Biol. (1999), 292, 375-387, PubMed 10493882 , DOI 10.1006/jmbi.1999.3061 ,
Entries sharing articles Swiss-Prot: 1 entries Detail
  Swiss-Prot: P81288 released on 1998-12-15
    Title RS4_GEOSE Entity 30S ribosomal protein S4
Related entities 1. RIBOSOMAL PROTEIN S4 DELTA 41, : 1 : 3 : 225 entities Detail
Interaction partners 1. RIBOSOMAL PROTEIN S4 DELTA 41, : 1 interactors Detail
Experiments performed 16 experiments Detail
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