NMR-based solution structure of the complex of Lactobacillus casei dihydrofolate reductase with trimethoprim and NADPH
TAFLWAQDRD GLIGKDGHLP WHLPDDLHYF RAQTVGKIMV VGRRTYESFP KRPLPERTNV VLTHQEDYQA QGAVVVHDVA AVFAYAKQHP DQELVIAGGA QIFTAFKDDV DTLLVTRLAG SFEGDTKMIP LNWDDFTKVS SRTVEDTNPA LTHTYEVWQK KA
Polymer type: polypeptide(L)
Total | 1H | 15N | |
---|---|---|---|
All | 92.4 % (1054 of 1141) | 91.5 % (888 of 971) | 97.6 % (166 of 170) |
Backbone | 99.8 % (479 of 480) | 99.7 % (325 of 326) | 100.0 % (154 of 154) |
Sidechain | 87.0 % (575 of 661) | 87.3 % (563 of 645) | 75.0 % (12 of 16) |
Aromatic | 69.6 % (71 of 102) | 72.4 % (71 of 98) | 0.0 % (0 of 4) |
Methyl | 100.0 % (97 of 97) | 100.0 % (97 of 97) |
1. Dihydrofolate reductase
TAFLWAQDRD GLIGKDGHLP WHLPDDLHYF RAQTVGKIMV VGRRTYESFP KRPLPERTNV VLTHQEDYQA QGAVVVHDVA AVFAYAKQHP DQELVIAGGA QIFTAFKDDV DTLLVTRLAG SFEGDTKMIP LNWDDFTKVS SRTVEDTNPA LTHTYEVWQK KATemperature 308 (±1) K, pH 6.5 (±0.1)
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Dihydrofolate reductase | [U-95% 15N] | 1.5 ~ 4.0 mM | |
2 | TRIMETHOPRIM | [U-95% 15N] | 1.5 ~ 4.0 mM | |
3 | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | [U-95% 15N] | 1.5 ~ 4.0 mM | |
4 | potassium phosphate | 25 mM | ||
5 | KCl | 50 mM |
Temperature 308 (±1) K, pH 6.5 (±0.1)
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
6 | Dihydrofolate reductase | 2.0 ~ 4.0 mM | ||
7 | TRIMETHOPRIM | 2.0 ~ 4.0 mM | ||
8 | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 2.0 ~ 4.0 mM | ||
9 | potassium phosphate | 25 mM | ||
10 | KCl | 50 mM |
Temperature 308 (±1) K, pH 6.5 (±0.1)
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
11 | Dihydrofolate reductase | [U-95% 15N] | 0.5 mM | |
12 | TRIMETHOPRIM | [U-95% 15N] | 0.5 mM | |
13 | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | [U-95% 15N] | 0.5 mM | |
14 | DMPC/DHPC (3/1) | 5 % | ||
15 | H2O/D2O (90/10) | 95 % |
Polymer type: polypeptide(L)
Total | 1H | 15N | |
---|---|---|---|
All | 54.5 % (1243 of 2282) | 53.9 % (1047 of 1942) | 57.6 % (196 of 340) |
Backbone | 59.6 % (572 of 960) | 59.8 % (390 of 652) | 59.1 % (182 of 308) |
Sidechain | 50.4 % (666 of 1322) | 50.6 % (653 of 1290) | 40.6 % (13 of 32) |
Aromatic | 35.8 % (73 of 204) | 37.2 % (73 of 196) | 0.0 % (0 of 8) |
Methyl | 58.8 % (114 of 194) | 58.8 % (114 of 194) |
1. Dihydrofolate reductase
TAFLWAQDRD GLIGKDGHLP WHLPDDLHYF RAQTVGKIMV VGRRTYESFP KRPLPERTNV VLTHQEDYQA QGAVVVHDVA AVFAYAKQHP DQELVIAGGA QIFTAFKDDV DTLLVTRLAG SFEGDTKMIP LNWDDFTKVS SRTVEDTNPA LTHTYEVWQK KATemperature 308 (±1) K, pH 6.5 (±0.1)
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Dihydrofolate reductase | [U-95% 15N] | 1.5 ~ 4.0 mM | |
2 | TRIMETHOPRIM | [U-95% 15N] | 1.5 ~ 4.0 mM | |
3 | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | [U-95% 15N] | 1.5 ~ 4.0 mM | |
4 | potassium phosphate | 25 mM | ||
5 | KCl | 50 mM |
Polymer type: polypeptide(L)
Total | 1H | 15N | |
---|---|---|---|
All | 39.6 % (1354 of 3423) | 39.1 % (1140 of 2913) | 42.0 % (214 of 510) |
Backbone | 43.3 % (623 of 1440) | 43.4 % (424 of 978) | 43.1 % (199 of 462) |
Sidechain | 36.7 % (728 of 1983) | 36.9 % (714 of 1935) | 29.2 % (14 of 48) |
Aromatic | 28.4 % (87 of 306) | 29.6 % (87 of 294) | 0.0 % (0 of 12) |
Methyl | 42.6 % (124 of 291) | 42.6 % (124 of 291) |
1. Dihydrofolate reductase
TAFLWAQDRD GLIGKDGHLP WHLPDDLHYF RAQTVGKIMV VGRRTYESFP KRPLPERTNV VLTHQEDYQA QGAVVVHDVA AVFAYAKQHP DQELVIAGGA QIFTAFKDDV DTLLVTRLAG SFEGDTKMIP LNWDDFTKVS SRTVEDTNPA LTHTYEVWQK KATemperature 308 (±1) K, pH 6.5 (±0.1)
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Dihydrofolate reductase | [U-95% 15N] | 1.5 ~ 4.0 mM | |
2 | TRIMETHOPRIM | [U-95% 15N] | 1.5 ~ 4.0 mM | |
3 | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | [U-95% 15N] | 1.5 ~ 4.0 mM | |
4 | potassium phosphate | 25 mM | ||
5 | KCl | 50 mM |