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BMRB: 6152

1SJ6

Solution structure of TIP-B1

Authors

Xu, C., Tang, Y., Xu, Y., Wu, J., Shi, Y., Zhang, Q., Zheng, P., Du, Y.

Assembly

TUMOR INHIBITORY PROTEIN

Entity

1. TUMOR INHIBITORY PROTEIN (polymer, Thiol state: all free), 101 monomers, 11502.70 Da Detail

MSGLRVYSTS VTGSREIKSQ QSEVTRILDG KRIQYQLVDI SQDNALRDEM RALAGNPKAT PPQIVNGDQY CGDYELFVEA VEQNTLQEFL KLALEHHHHH H

Formula weight

11502.7 Da

Source organism

Exptl. method

Refine. method

distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 95.0 %, Completeness: 84.1 %, Completeness (bb): 91.3 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	84.1 % (986 of 1172)	82.3 % (503 of 611)	84.4 % (380 of 450)	92.8 % (103 of 111)
Backbone	91.3 % (548 of 600)	91.7 % (188 of 205)	90.6 % (269 of 297)	92.9 % (91 of 98)
Sidechain	78.7 % (525 of 667)	77.6 % (315 of 406)	79.8 % (198 of 248)	92.3 % (12 of 13)
Aromatic	26.3 % (20 of 76)	39.5 % (15 of 38)	13.2 % (5 of 38)
Methyl	96.4 % (106 of 110)	96.4 % (53 of 55)	96.4 % (53 of 55)

1. TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3

MSGLRVYSTS VTGSREIKSQ QSEVTRILDG KRIQYQLVDI SQDNALRDEM RALAGNPKAT PPQIVNGDQY CGDYELFVEA VEQNTLQEFL KLALEHHHHH H

Show sample condition

Sample

Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

LACS Plot; CA

Referencing offset: 0.14 ppm, Outliers: 2 Detail

LACS Plot; CB

Referencing offset: 0.14 ppm, Outliers: 2 Detail

LACS Plot; HA

Referencing offset: 0.05 ppm, Outliers: 1 Detail

LACS Plot; CO

Referencing offset: 0.27 ppm, Outliers: 4 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 1SJ6, Strand ID: A Detail

Release date

2004-05-14

Citation

Solution structure of recombinant TIP-B1, a novel TNF inhibitory protein
Xu, C., Tang, Y.J., Xu, Y.Q., Wu, J.H., Shi, Y.Y., Zhang, Q.H., Zheng, P.C., Du, Y.Z.

Related entities 1. TUMOR INHIBITORY PROTEIN, : 1 : 4 : 84 entities Detail

Interaction partners 1. TUMOR INHIBITORY PROTEIN, : 5 interactors Detail

More details for 5 interactors identified by 3 citations

Experiments performed 10 experiments Detail

1 2D NOESY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

2 3D HCCH COSY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

3 3D 13C-separated NOESY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

4 3D 15N-separated NOESY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

5 3D CBCA(CO)NH

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

6 3D CBCANH

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

7 3D HNCO

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

8 3D H(CCO)NH TOCSY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

9 3D C(CO)NH TOCSY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

10 3D HCCH TOCSY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Pressure 1 atm, Temperature 295 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3	[U-95% 13C; U-90% 15N]		2 mM
2	phosphate buffer			20 mM
3	NaCl			100 mM
4	H2O			90 %
5	D2O			10 %

nullKeywords thioredoxin superfamily, Nuclear protein