BMRBj - BMREntryMaster

Found 1 Document (2.099 seconds)

BMRB: 6224

2D2A

Assignment of the 1H, 15N and 13C resonances of SufA from E. coli

Authors

Duraffourg, N., Ollagnier-de-Choudens, S., Fontecave, M., Loiseau, L., Barras, F., Marion, D., Blanchard, L.

Assembly

SufA

Entity

1. SufA (polymer, Thiol state: all free), 130 monomers, 14365.06 Da Detail

MDMHSGTFNP QDFAWQGLTL TPAAAIHIRE LVAKQPGMVG VRLGVKQTGC AGFGYVLDSV SEPDKDDLLF EHDGAKLFVP LQAMPFIDGT EVDFVREGLN QIFKFHNPKA QNECGCGESF GVLEHHHHHH

Formula weight

14365.06 Da

Source organism

Escherichia coli

Exptl. method

NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 95.4 %, Completeness: 68.6 %, Completeness (bb): 89.9 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	68.6 % (1021 of 1489)	60.9 % (468 of 768)	73.9 % (433 of 586)	88.9 % (120 of 135)
Backbone	89.9 % (689 of 766)	85.0 % (227 of 267)	92.8 % (349 of 376)	91.9 % (113 of 123)
Sidechain	52.3 % (439 of 839)	48.1 % (241 of 501)	58.6 % (191 of 326)	58.3 % (7 of 12)
Aromatic	1.3 % (2 of 160)	2.5 % (2 of 80)	0.0 % (0 of 79)	0.0 % (0 of 1)
Methyl	75.0 % (96 of 128)	75.0 % (48 of 64)	75.0 % (48 of 64)

1. SufA

MDMHSGTFNP QDFAWQGLTL TPAAAIHIRE LVAKQPGMVG VRLGVKQTGC AGFGYVLDSV SEPDKDDLLF EHDGAKLFVP LQAMPFIDGT EVDFVREGLN QIFKFHNPKA QNECGCGESF GVLEHHHHHH

Show sample condition

Sample

Temperature 298 (±0.1) K, pH 7 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	SufA	[U-15N; U-13C]		1.0 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: -0.22 ppm, Outliers: 3 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: -0.22 ppm, Outliers: 3 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: 0.02 ppm, Outliers: 3 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: 0.23 ppm, Outliers: 2 Detail

Release date

2004-12-15

Citation

Letter to the Editor: Assignment of the 1H, 15N and 13C resonances of SufA from Escherichia coli involved in Fe-S cluster biosynthesis
Duraffourg, N., Ollagnier-de-Choudens, S., Fontecave, M., Loiseau, L., Barras, F., Marion, D., Blanchard, L.
J. Biomol. NMR (2004), 30, 379-380, PubMed , DOI:

Related entities 1. SufA, : 1 : 2 : 108 entities Detail

Interaction partners 1. SufA, : 6 interactors Detail

More details for 6 interactors identified by 2 citations

Experiments performed 10 experiments Detail

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr6224_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr6224_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	shift_set_1	Warning	1119		95.4 (chain: 1, length: 130)
1	Chemical shift references	chemical_shift_reference	OK	3		No information

Assigned chemical shifts

Saveframe: shift_set_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 130, Sequence coverage: 95.4%
- Total number of assignments
  - ¹H chemical shifts: 566
  - ¹³C chemical shifts: 433
  - ¹⁵N chemical shifts: 120
- Completeness of assignments
  - Entity_assemble_ID: 1
- Redox state of CYS
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	768	470	61.2
¹³C chemical shifts	586	433	73.9
¹⁵N chemical shifts	138	120	87.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	267	229	85.8
¹³C chemical shifts	260	242	93.1
¹⁵N chemical shifts	123	113	91.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	501	241	48.1
¹³C chemical shifts	326	191	58.6
¹⁵N chemical shifts	15	7	46.7

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	68	48	70.6
¹³C chemical shifts	68	48	70.6

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	80	0	0.0
¹³C chemical shifts	79	0	0.0
¹⁵N chemical shifts	1	0	0.0

Keywords heteronuclear NMR, Fe-S cluster biosynthesis, scaffold protein

Search

Query history

Resources

Search for primary databases

Search for subsidiary databases

Display

Hits per page

Statistics

Query Changes will take effect after "OK" button is selected.

Maximum hits

Default conjunction operator

Omni-box

Search filter

Sequence search (BLAST)

E-value

Query sequence coverage

Miscellaneous

The number of previewed publications

Completeness of assigned chemical shift

Sequence chart about top aligned regions

Sequence chart about interacting regions

Hit context with highlight

Link destinations for BMRB, PDB and EMDB

Found 1 Document (2.099 seconds)

BMRB: 6224

Sample

Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. SufA, : 1 : 2 : 108 entities Detail

Interaction partners 1. SufA, : 6 interactors Detail

Experiments performed 10 experiments Detail

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Chemical shift validation 3 contents Detail