BMRBj - BMREntryMaster

Found 1 Document (1.971 seconds)

BMRB: 6228

1W1N

The Solution Structure of the FATC Domain of the Protein Kinase TOR Suggest a Redox Regulatory Mechanism

Authors

Dames, S.A., Mulet, J.M., Rathgeb-Szabo, K., Hall, M.N., Grzesiek, S.

Assembly

yeast TOR1 FATC

Entity

1. yeast TOR1 FATC (polymer, Thiol state: all disulfide bound), 33 monomers, 3960.446 Da Detail

NELDVPEQVD KLIQQATSIE RLCQHYIGWC PFW

Formula weight

3960.446 Da

Entity Connection

disulfide 1 Detail

ID	Type	Value order	Atom ID 1	Atom ID 2
1	disulfide	sing	1:CYS23:SG	1:CYS30:SG

Source organism

Saccharomyces cerevisiae

Exptl. method

NMR

Refine. method

RESTRAINED TORSION ANGLE MOLECULAR DYNAMICS

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 97.1 %, Completeness (bb): 94.3 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	97.1 % (398 of 410)	97.7 % (209 of 214)	96.8 % (153 of 158)	94.7 % (36 of 38)
Backbone	94.3 % (183 of 194)	93.8 % (61 of 65)	94.9 % (93 of 98)	93.5 % (29 of 31)
Sidechain	99.6 % (247 of 248)	99.3 % (148 of 149)	100.0 % (92 of 92)	100.0 % (7 of 7)
Aromatic	100.0 % (46 of 46)	100.0 % (23 of 23)	100.0 % (21 of 21)	100.0 % (2 of 2)
Methyl	100.0 % (36 of 36)	100.0 % (18 of 18)	100.0 % (18 of 18)

1. target of rapamycin

NELDVPEQVD KLIQQATSIE RLCQHYIGWC PFW

Show sample condition

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

Protein Blocks Logo

Calculated from 20 models in PDB: 1W1N, Strand ID: A Detail

Release date

2004-06-10

Citation

The solution structure of the FATC domain of the protein kinase target of rapamycin suggests a role for redox-dependent structural and cellular stability
Dames, S.A., Mulet, J.M., Rathgeb-Szabo, K., Hall, M.N., Grzesiek, S.
J. Biol. Chem. (2005), 280, 20558-20564, PubMed 15772072 , DOI 10.1074/jbc.M501116200 , Abstract

Related entities 1. yeast TOR1 FATC, : 1 : 4 : 97 entities Detail

Interaction partners 1. yeast TOR1 FATC, : 71 interactors Detail

More details for 71 interactors identified by 11 citations

Experiments performed 17 experiments Detail

1 3D CBCANH

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

2 3D CBCA(CO)NH

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

3 3D HBHA(CBCACO)NH

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

4 3D CCONH-TOCSY

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

5 3D HCCH-TOCSY

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

6 3D HNCO

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

7 3D HAHB-COSY

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

8 3D HNHA

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

9 3D 15N ROESY

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

10 3D 15N NOESY

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

11 3D 13C NOESY

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

12 13CO-{13Cg)-SED-15N HSQC

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

13 15N-{13Cg)-SED-15N HSQC

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

14 15N-1H-IPAP-HSQC

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

15 T1 measurement

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

16 T2 measurement

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

17 {1H}-15N-NOE

Instrument

#1 Model Bruker DRX (600 MHz)

#2 Model Bruker DRX (800 MHz)

Sample #1

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Concentration
1	target of rapamycin	[U-95% 13C; U-90% 15N]	0.5 mM
2	H2O		95 %
3	D2O		5 %
4	Tris		10 mM

Sample #2

Temperature 298 (±1) K, pH 6 (±0.1)

#	Name	Isotope labeling	Type	Concentration
5	target of rapamycin	[U-95% 13C; U-90% 15N]		0.5 mM
6	Tris			10 mM

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr6228_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	True (see coordinates for details)
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

Ptnr_site_1	Ptnr_site_2	Redox_state_prediction_1	Redox_state_prediction_2	Distance (Å)
1:23:CYS:SG	1:30:CYS:SG	oxidized, CA 55.671, CB 39.482 ppm	oxidized, CB 40.924 ppm	n/a

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr6228_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	chemical_shift_set_1	Warning	438		100.0 (chain: 1, length: 33)
1	Chemical shift references	chemical_shift_reference	OK	3		No information

Assigned chemical shifts

Saveframe: chemical_shift_set_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 33, Sequence coverage: 100.0%
- Total number of assignments
  - ¹³C chemical shifts: 154
  - ¹H chemical shifts: 247
  - ¹⁵N chemical shifts: 37
- Completeness of assignments
  - Entity_assemble_ID: 1
- Redox state of CYS
- Peptide bond of PRO
- Tautomeric state of HIS
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	158	154	97.5
¹H chemical shifts	214	211	98.6
¹⁵N chemical shifts	39	37	94.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	66	62	93.9
¹H chemical shifts	65	63	96.9
¹⁵N chemical shifts	31	30	96.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	92	92	100.0
¹H chemical shifts	149	148	99.3
¹⁵N chemical shifts	8	7	87.5

Search

Query history

Resources

Search for primary databases

Search for subsidiary databases

Display

Hits per page

Statistics

Query Changes will take effect after "OK" button is selected.

Maximum hits

Default conjunction operator

Omni-box

Search filter

Sequence search (BLAST)

E-value

Query sequence coverage

Miscellaneous

The number of previewed publications

Completeness of assigned chemical shift

Sequence chart about top aligned regions

Sequence chart about interacting regions

Hit context with highlight

Link destinations for BMRB, PDB and EMDB

Found 1 Document (1.971 seconds)

BMRB: 6228

Sample #1

Sample #2

Related entities 1. yeast TOR1 FATC, : 1 : 4 : 97 entities Detail

Interaction partners 1. yeast TOR1 FATC, : 71 interactors Detail

Experiments performed 17 experiments Detail

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1

Sample #2

Instrument

Sample #1