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1H, 13C, and 15N chemical shift assignments for the catalytic domain of MMP-12
Authors
Markus, M.A., Dwyer, B., Wolfrom, S., Li, J., Li, W., Malakian, K., Wilhelm, J., Tsao, D.H.H.
Assembly
mmp12
Entity
1. mmp12 (polymer, Thiol state: not present), 165 monomers, 18342.38 Da Detail

MFREMPGGPV WRKHYITYRI NNYTPDMNRE DVDYAIRKAF QVWSNVTPLK FSKINTGMAD ILVVFARGAH GDFHAFDGKG GILAHAFGPG SGIGGDAHFD EDEFWTTHSG GTNLFLTAVH EIGHSLGLGH SSDPKAVMFP TYKYVDINTF RLSADDIRGI QSLYG


2. DSV (non-polymer), 363.451 Da
Total weight
18705.832 Da
Max. entity weight
18342.38 Da
Source organism
Homo sapiens
Exptl. method
NMR
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 99.4 %, Completeness: 86.3 %, Completeness (bb): 95.1 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All86.3 % (1633 of 1893)83.9 % (815 of 971)87.6 % (659 of 752)93.5 % (159 of 170)
Backbone95.1 % (928 of 976)94.2 % (323 of 343)96.4 % (458 of 475)93.0 % (147 of 158)
Sidechain79.7 % (846 of 1062)78.3 % (492 of 628)81.0 % (342 of 422)100.0 % (12 of 12)
Aromatic46.4 % (115 of 248)46.8 % (58 of 124)44.6 % (54 of 121)100.0 % (3 of 3)
Methyl100.0 % (160 of 160)100.0 % (80 of 80)100.0 % (80 of 80)

1. mmp12

MFREMPGGPV WRKHYITYRI NNYTPDMNRE DVDYAIRKAF QVWSNVTPLK FSKINTGMAD ILVVFARGAH GDFHAFDGKG GILAHAFGPG SGIGGDAHFD EDEFWTTHSG GTNLFLTAVH EIGHSLGLGH SSDPKAVMFP TYKYVDINTF RLSADDIRGI QSLYG

Sample #1

Pressure 1 (±0.1) atm, Temperature 298 (±1.0) K, pH 6.0 (±0.2), Details 15N labelled MMP-12 (with bound inhibitor).


#NameIsotope labelingTypeConcentration
1mmp12[U-15N]0.2 mM
2inhibitor0.2 mM
Sample #2

Pressure 1 (±0.1) atm, Temperature 298 (±1.0) K, pH 6.0 (±0.2), Details 13C 15N labelled MMP-12 (with bound inhibitor).


#NameIsotope labelingTypeConcentration
3mmp12[U-13C; U-15N]0.7 mM
4inhibitor0.7 mM
Sample #3

Pressure 1 (±0.1) atm, Temperature 298 (±1.0) K, pH 6.0 (±0.2), Details 13C, 15N labelled MMP-12 (with bound inhibitor) in 2H2O.


#NameIsotope labelingTypeConcentration
5mmp12[U-13C; U-15N]0.4 mM
6inhibitor0.4 mM
7D2O100 %
Sample #4

Pressure 1 (±0.1) atm, Temperature 298 (±1.0) K, pH 6.0 (±0.2), Details 10% 13C labelled MMP-12 with bound inhibitor.


#NameIsotope labelingTypeConcentration
8mmp12[U-10% 13C]0.55 mM
9inhibitor0.55 mM

LACS Plot; CA
Referencing offset: -0.08 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: -0.08 ppm, Outliers: 1 Detail
LACS Plot; HA
Referencing offset: -0.05 ppm, Outliers: 2 Detail
LACS Plot; CO
Referencing offset: 0.12 ppm, Outliers: 3 Detail
Release date
2005-04-07
Citation
1H, 13C, and 15N assignments of MMP-12, a key protease implicated in lung tissue remodeling
Markus, M.A., Dwyer, B., Wolfrom, S., Li, J., Li, W., Malakian, K., Wilhelm, J., Tsao, D.H.H.
J. Biomol. NMR (2005), 31, 260-260, PubMed 15803400 , DOI 10.1007/s10858-005-0181-1 ,
Related entities 1. mmp12, : 1 : 82 : 196 entities Detail
Interaction partners 1. mmp12, : 1 interactors Detail
Experiments performed 12 experiments Detail
Chemical shift validation 4 contents Detail
Keywords chemical shift assignments, macrophage elastase, matrix metalloprotease