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Sequential Backbone Assignment and Secondary Structure of Peroxisome Proliferator-Activated Receptor g Ligand Binding Domain
Authors
Riepl, H., Hartl, R., Bauer, M., Nar, H., Kauschke, S., Kalbitzer, H., Maurer, T.
Assembly
ligand binding domain of peroxisome proliferator-activated receptor gamma
Entity
1. ligand binding domain of peroxisome proliferator-activated receptor gamma (polymer, Thiol state: not reported), 270 monomers, 30795.49 Da Detail

ESADLRALAK HLYDSYIKSF PLTKAKARAI LTGKTTDKSP FVIYDMNSLM MGEDKIKFKH ITPLQEQSKE VAIRIFQGCQ FRSVEAVQEI TEYAKSIPGF VNLDLNDQVT LLKYGVHEII YTMLASLMNK DGVLISEGQG FMTREFLKSL RKPFGDFMEP KFEFAVKFNA LELDDSDLAI FIAVIILSGD RPGLLNVKPI EDIQDNLLQA LELQLKLNHP ESSQLFAKLL QKMTDLRQIV TEHVQLLQVI KKTETDMSLH PLLQEIYKDL


Formula weight
30795.49 Da
Source organism
Homo sapiens
Exptl. method
NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 93.7 %, Completeness: 42.1 %, Completeness (bb): 75.0 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All42.1 % (1390 of 3303)24.9 % (428 of 1718)56.4 % (729 of 1293)79.8 % (233 of 292)
Backbone75.0 % (1192 of 1589)49.4 % (262 of 530)87.9 % (702 of 799)87.7 % (228 of 260)
Sidechain22.0 % (435 of 1973)14.0 % (166 of 1188)35.1 % (264 of 753)15.6 % (5 of 32)
Aromatic 3.9 % (9 of 230) 7.8 % (9 of 115) 0.0 % (0 of 115)
Methyl13.7 % (48 of 350)12.6 % (22 of 175)14.9 % (26 of 175)

1. peroxisome proliferator-activated receptor gamma

ESADLRALAK HLYDSYIKSF PLTKAKARAI LTGKTTDKSP FVIYDMNSLM MGEDKIKFKH ITPLQEQSKE VAIRIFQGCQ FRSVEAVQEI TEYAKSIPGF VNLDLNDQVT LLKYGVHEII YTMLASLMNK DGVLISEGQG FMTREFLKSL RKPFGDFMEP KFEFAVKFNA LELDDSDLAI FIAVIILSGD RPGLLNVKPI EDIQDNLLQA LELQLKLNHP ESSQLFAKLL QKMTDLRQIV TEHVQLLQVI KKTETDMSLH PLLQEIYKDL

Sample

Temperature 298 K, pH 7.4


#NameIsotope labelingTypeConcentration
1ligand binding domain of peroxisome proliferator-activated receptor gamma0.0 ~ 0.0 mM

Protein Blocks Logo
Calculated from 9 models in PDB: 2QMV, Strand ID: A Detail


Release date
2006-02-16
Citation
Sequential backbone assignment of peroxisome proliferator-activated receptor-gamma ligand binding domain
Riepl, H., Hartl, R., Bauer, M., Nar, H., Kauschke, S., Kalbitzer, H., Maurer, T.
J. Biomol. NMR (2005), 32, 259-259, PubMed 16132831 , DOI 10.1007/s10858-005-7556-1 ,
Related entities 1. ligand binding domain of peroxisome proliferator-activated receptor gamma, : 1 : 102 : 2 : 18 entities Detail
Interaction partners 1. ligand binding domain of peroxisome proliferator-activated receptor gamma, : 33 interactors Detail
Experiments performed 1 experiments Detail