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Complex of TM1a(1-14)Zip with TM9a(251-284): a model for the polymerization domain ("overlap region")of tropomyosin
Authors
Greenfield, N.J., Huang, Y.J., Swapna, G., Bhattacharya, A., Rapp, B., Singh, A., Montelione, G.T., Hitchcock-DeGregori, S.E.
Assembly
NTD-CTD complex
Entity
1. Tropomyosin N-terminal domain (polymer, Thiol state: not present), 33 monomers, 3900.635 × 2 Da Detail

GMDAIKKKMQ MLKLDNYHLE NEVARLKKLV GER


2. Tropomyosin C-terminal domain (polymer, Thiol state: all disulfide bound), 37 monomers, 4171.656 × 2 Da Detail

GCGKSIDDLE DELYAQKLKY KAISEELDHA LKDMTSI


Total weight
16144.582 Da
Max. entity weight
4171.656 Da
Entity Connection
disulfide 1 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1disulfidesing2:CYS2:SG2:CYS2:SG

Source organism
Rattus rattus
Exptl. method
NMR
Refine. method
Initail structure was calculated with Torsion Angle Dynamics and refined with simulated annealing and included a term for explicit solvent in the refinement protocol.
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 96.0 %, Completeness (bb): 97.4 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All96.0 % (808 of 842)97.5 % (434 of 445)93.5 % (302 of 323)97.3 % (72 of 74)
Backbone97.4 % (409 of 420)97.2 % (140 of 144)97.6 % (201 of 206)97.1 % (68 of 70)
Sidechain95.3 % (465 of 488)97.7 % (294 of 301)91.3 % (167 of 183)100.0 % (4 of 4)
Aromatic46.9 % (15 of 32)93.8 % (15 of 16) 0.0 % (0 of 16)
Methyl97.4 % (74 of 76)97.4 % (37 of 38)97.4 % (37 of 38)

1. Tropomyosin N-terminal domain

GMDAIKKKMQ MLKLDNYHLE NEVARLKKLV GER

2. Tropomyosin C-terminal domain

GCGKSIDDLE DELYAQKLKY KAISEELDHA LKDMTSI

Sample #1

Pressure 1 (±0.05) atm, Temperature 283 (±0.1) K, Details NTD-CTD complex both chains labeled with 15N, in 100 mM NaCl, 10 mM NaPO4, 7.5% D2O pH*=6.5


#NameIsotope labelingTypeConcentration
1Tropomyosin C-terminal domain[U-95% 15N]protein1.0 (±0.1) mM
2Tropomyosin N-terminal domain[U-95% 15N]protein1.0 (±0.1) mM
3NaClsalt100 (±10.0) mM
4Sodium Phosphatebuffer10 (±1.0) mM
5Deuterium Oxide[U-2H]solvent7.5 (±2.5) %
Sample #2

Pressure 1 (±0.05) atm, Temperature 283 (±0.1) K, Details NTD-CTD complex CTD labeled with 13C/15N NTD unlabeled


#NameIsotope labelingTypeConcentration
6Tropomyosin C-terminal domain[U-95% 15N U-95% 13C]protein1.0 (±0.1) mM
7Tropomyosin N-terminal domainunlabeledprotein1.0 (±0.1) mM
8NaClsalt100 (±10.0) mM
9Sodium Phosphatebuffer10 (±1.0) mM
10Deuterium Oxide[U-2H]solvent7.5 (±2.5) %
Sample #3

Pressure 1 (±0.05) atm, Temperature 283 (±0.1) K, Details NTD-CTD NTD labeled with 13C/15N CTD unlabeled


#NameIsotope labelingTypeConcentration
11Tropomyosin C-terminal domainunlabeledprotein1.0 (±0.1) mM
12Tropomyosin N-terminal domain[U-95% 15N; U-95% 13C]protein1.0 (±0.1) mM
13NaClsalt100 (±10.0) mM
14Sodium Phosphatebuffer10 (±1.0) mM
15Deuterium Oxide[U-2H]solvent7.5 (±2.5) %
Sample #4

Pressure 1 (±0.05) atm, Temperature 283 (±0.1) K, Details NTD-CTD complex CTD labeled with 13C/15N NTD unlabeled


#NameIsotope labelingTypeConcentration
16Tropomyosin C-terminal domain[U-95% 15N]protein1.0 (±0.1) mM
17Tropomyosin N-terminal domain[U-95% 15N]protein1.0 (±0.1) mM
18NaClsalt100 (±10.0) mM
19Sodium Phosphatebuffer10 (±1.0) mM
20Deuterium Oxide[U-2H]solvent99 (±1.0) %
Sample #5

Pressure 1 (±0.05) atm, Temperature 283 (±0.1) K, Details NTD-CTD complex NTD labeled with 13C/15N CTD unlabeled


#NameIsotope labelingTypeConcentration
21Tropomyosin C-terminal domainunlabeledprotein1.0 (±0.1) mM
22Tropomyosin N-terminal domain[U-95% 15N; U-95% 13C]protein1.0 (±0.1) mM
23NaClsalt100 (±10.0) mM
24Sodium Phosphatebuffer10 (±1.0) mM
25Deuterium Oxide[U-2H]solvent7.5 (±2.5) %
Sample #6

Pressure 1 (±0.05) atm, Temperature 283 (±0.1) K, Details NTD-CTD complex one chain of CTD labeled with 13C/15N CTD one chain of CTD unlabeled both chains of NTD unlabeled


#NameIsotope labelingTypeConcentration
26Tropomyosin C-terminal domain[U-95% 15N; U-95% 13C]protein0.5 (±0.05) mM
27Tropomyosin C-terminal domainunlabeledprotein0.5 (±0.05) mM
28Tropomyosin N-terminal domainunlabeledprotein1.0 (±0.1) mM
29NaClsalt100 (±10.0) mM
30Sodium Phosphatebuffer10 (±1.0) mM
31Deuterium Oxide[U-2H]solvent7.5 (±2.5) %
Sample #7

Pressure 1 (±0.05) atm, Temperature 283 (±0.1) K, Details NTD-CTD complex one chain of NTD labeled with 13C/15N CTD one chain of NTD unlabeled both chains of CTD unlabeled


#NameIsotope labelingTypeConcentration
32Tropomyosin C-terminal domainunlabeledprotein1.0 (±0.1) mM
33Tropomyosin N-terminal domain[U-95% 15N; U-95% 13C]protein0.5 (±0.05) mM
34Tropomyosin N-terminal domainunlabeledprotein0.5 (±0.05) mM
35NaClsalt100 (±10.0) mM
36Sodium Phosphatebuffer10 (±1.0) mM
37Deuterium Oxide[U-2H]solvent7.5 (±2.5) %

Protein Blocks Logo
Calculated from 10 models in PDB: 2G9J, Strand ID: A, B, C, D Detail


Release date
2006-10-30
Citation 1
Solution NMR structure of the junction between tropomyosin molecules: implications for actin binding and regulation
Greenfield, N.J., Huang, Y.J., Swapna, G., Bhattacharya, A., Rapp, B., Singh, A., Montelione, G.T., Hitchcock-DeGregori, S.E.
J. Mol. Biol. (2006), 364, 80-96, PubMed 16999976 , DOI 10.1016/j.jmb.2006.08.033 ,
Citation 2
A topology-constrained distance network algorithm for protein structure determination from NOESY data
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Citation 5
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Citation 6
Crystallography & NMR system: A new software suite for macromolecular structure determination
Brunger, A.T., Adams, P.D., Clore, DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J., Kuszewski, J., Nilges, M., Pannu, N.S., Read, R.J., Rice, L.M., Simonson, T., Warren, G.L.
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Citation 7
SPARKY 3
Goddard, T.D., Kneller, D.G.
Related entities 1. Tropomyosin N-terminal domain, : 7 entities Detail
Related entities 2. Tropomyosin C-terminal domain, : 1 : 1 : 15 : 68 entities Detail
Interaction partners 2. Tropomyosin C-terminal domain, : 2 interactors Detail
Experiments performed 19 experiments Detail
nullKeywords intermolecular junction, N-terminal C-terminal Interface, overlap complex, parallel coiled coil, peptide complex, Polymerization domain, tropomyosin, AutoStructure, DYANA, CYANA, NMRPipe, CNS, Sparky