BMRB: 7121

Solution Structure of UPF0301 protein HD_1794

Authors

Zhang, Q., Liu, G., Shastry, R., Jiang, M., Cunningham, K., Ma, L.C., Xiao, R., Acton, T.R., Montelione, G.T., Szyperski, T.

Assembly

UPF0301 protein HD 1794

Entity

1. UPF0301 protein HD 1794 (polymer, Thiol state: all free), 188 monomers, 21244.65 Da Detail

MFGNLQGKFI IATPEMDDEY FDRTVIYICE HNDNGTIGVI INTPTDLSVL ELLTRMDFQM AKPRIYTQDQ MVLNGGPVNQ DRGFIVHSKT DHEFTHSYKV TDDITLTTSG DVLDSFGTQT APEKFIVCLG CSTWKPHQLE QEIAQNYWLL SEANNQTLFE TSYLDRWVEA NEMLGISGIL APAGRALE

Formula weight

21244.65 Da

Source organism

[Haemophilus] ducreyi

Exptl. method

NMR

Refine. method

distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 93.6 %, Completeness: 80.8 %, Completeness (bb): 77.5 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	80.8 % (1761 of 2180)	87.8 % (984 of 1121)	71.2 % (609 of 855)	82.4 % (168 of 204)
Backbone	77.5 % (863 of 1114)	89.8 % (343 of 382)	65.9 % (363 of 551)	86.7 % (157 of 181)
Sidechain	85.2 % (1057 of 1241)	86.7 % (641 of 739)	84.6 % (405 of 479)	47.8 % (11 of 23)
Aromatic	75.3 % (146 of 194)	88.7 % (86 of 97)	61.7 % (58 of 94)	66.7 % (2 of 3)
Methyl	96.3 % (210 of 218)	96.3 % (105 of 109)	96.3 % (105 of 109)

1. UPF0301 protein HD 1794

MFGNLQGKFI IATPEMDDEY FDRTVIYICE HNDNGTIGVI INTPTDLSVL ELLTRMDFQM AKPRIYTQDQ MVLNGGPVNQ DRGFIVHSKT DHEFTHSYKV TDDITLTTSG DVLDSFGTQT APEKFIVCLG CSTWKPHQLE QEIAQNYWLL SEANNQTLFE TSYLDRWVEA NEMLGISGIL APAGRALE

Show sample condition

Sample

Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Type	Concentration
1	UPF0301 protein HD_1794			0.0 ~ 0.0 mM
2	MES			50 mM
3	DTT			10 mM
4	Arginine			50 mM
5	NaN3			0.02 %
6	H2O			95 %
7	D2O			5 %

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LACS Plot; CA

Referencing offset: 0.21 ppm, Outliers: 4 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	na	na	0.0 ppm	null	null	0.0
1H	na	na	0.0 ppm	null	null	0.0
15N	na	na	0.0 ppm	null	null	0.0

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LACS Plot; CB

Referencing offset: 0.21 ppm, Outliers: 4 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	na	na	0.0 ppm	null	null	0.0
1H	na	na	0.0 ppm	null	null	0.0
15N	na	na	0.0 ppm	null	null	0.0

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LACS Plot; HA

Referencing offset: -0.04 ppm, Outliers: 2 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	na	na	0.0 ppm	null	null	0.0
1H	na	na	0.0 ppm	null	null	0.0
15N	na	na	0.0 ppm	null	null	0.0

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Protein Blocks Logo

Calculated from 20 models in PDB: 2DO8, Strand ID: A Detail

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Release date

2007-11-20

Citation

Solution Structure of UPF0301 protein HD_1794
Zhang, Q., Liu, G., Shastry, R., Jiang, M., Cunningham, K., Ma, L.C., Xiao, R., Acton, T.R., Montelione, G.T., Szyperski, T.

Related entities 1. UPF0301 protein HD 1794, : 1 : 1 : 117 entities Detail

Experiments performed 5 experiments Detail