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Backbone Sequential Resonance Assignments of Yeast iso-2 Cytochrome c, Reduced and Oxidized forms
Authors
Benavides-Garcia, M.G., Rivera, E.V., Ramos, W., Hinck, A.P., Nall, B.T.
Assembly
oxidized yeast iso-2 cytochrome c
Entity
1. yeast iso-2 cytochrome c, oxidized form (polymer, Thiol state: all other bound), 112 monomers, 12343.87 Da Detail

AKESTGFKPG SAKKGATLFK TRCQQCHTIE EGGPNKVGPN LHGIFGRHSG QVKGYSYTDA NINKNVKWDE DSMSEYLTNP AKYIPGTKMA FAGLKKEKDR NDLITYMTKA AK


2. HEC (non-polymer), 618.503 Da
Total weight
12962.373 Da
Max. entity weight
12343.87 Da
Entity Connection
thioester 2, metal coordination 2 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1metal coordinationsing1:MET89:SD2:HEC1:FE
2metal coordinationsing1:HIS27:na2:HEC1:FE
3thioestersing1:CYS23:SG2:HEC1:CAB
4thioestersing1:CYS26:SG2:HEC1:CAC

Source organism
Saccharomyces cerevisiae
Exptl. method
NMR
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 99.1 %, Completeness: 70.3 %, Completeness (bb): 95.9 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All70.3 % (915 of 1302)55.9 % (383 of 685)85.6 % (427 of 499)89.0 % (105 of 118)
Backbone95.9 % (635 of 662)91.8 % (212 of 231)98.5 % (319 of 324)97.2 % (104 of 107)
Sidechain51.2 % (379 of 740)37.7 % (171 of 454)75.3 % (207 of 275) 9.1 % (1 of 11)
Aromatic12.5 % (13 of 104)15.4 % (8 of 52) 9.8 % (5 of 51) 0.0 % (0 of 1)
Methyl54.5 % (48 of 88)25.0 % (11 of 44)84.1 % (37 of 44)

1. yeast iso-2 cytochrome c, oxidized form

AKESTGFKPG SAKKGATLFK TRCQQCHTIE EGGPNKVGPN LHGIFGRHSG QVKGYSYTDA NINKNVKWDE DSMSEYLTNP AKYIPGTKMA FAGLKKEKDR NDLITYMTKA AK

Sample

Temperature 293 (±1) K, pH 6.0 (±0.1)


#NameIsotope labelingTypeConcentration
1yeast iso-2 cytochrome c, oxidized form[U-13C; U-15N]2.0 mM

Release date
2002-04-04
Citation 1
Backbone sequential resonance assignments of yeast iso-2 cytochrome c, reduced and oxidized forms
Benavides-Garcia, M.G., Rivera, E.V., Ramos, W., Hinck, A.P., Nall, B.T.
J. Biomol. NMR (2002), 22, 93-94, PubMed 11885986 ,
Citation 2
NMRPipe: a multidimensional spectral processing system based on UNIX pipes
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A.
J. Biomol. NMR (1995), 6, 277-293, PubMed 8520220 ,
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Related entities 1. yeast iso-2 cytochrome c, oxidized form, : 1 : 4 : 231 entities Detail
Interaction partners 1. yeast iso-2 cytochrome c, oxidized form, : 3 interactors Detail
Experiments performed 6 experiments Detail
Chemical shift validation 4 contents Detail
Keywords Cytochrome c, NMR assignments, heme protein, yeast iso-2, E. coli expression