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BMRB: 5010


5010
1JAJ
1H, 15N, and 13C chemical shift assignments for DNA polymerase X
Authors
Maciejewski, M.W., Pan, B., Shin, R., Denninger, A., Mullen, G.P.
Assembly
DNA Polymerase X
Entity
1. DNA Polymerase X (polymer, Thiol state: all free), 174 monomers, 20314.16 Da Detail

MLTLIQGKKI VNHLRSRLAF EYNGQLIKIL SKNIVAVGSL RREEKMLNDV DLLIIVPEKK LLKHVLPNIR IKGLSFSVKV CGERKCVLFI EWEKKTYQLD LFTALAEEKP YAIFHFTGPV SYLIRIRAAL KKKNYKLNQY GLFKNQTLVP LKITTEKELI KELGFTYRIP KKRL


Formula weight
20314.16 Da
Source organism
African swine fever virus BA71V
Exptl. method
NMR
Refine. method
torsion angle dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 99.4 %, Completeness: 85.8 %, Completeness (bb): 95.0 % Detail
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Polymer type: polypeptide(L)

Total1H13C15N
All85.8 % (1921 of 2238)85.7 % (1010 of 1179)84.2 % (738 of 877)95.1 % (173 of 182)
Backbone95.0 % (980 of 1032)96.6 % (338 of 350)93.6 % (481 of 514)95.8 % (161 of 168)
Sidechain79.7 % (1094 of 1372)81.1 % (672 of 829)77.5 % (410 of 529)85.7 % (12 of 14)
Aromatic47.5 % (76 of 160)90.0 % (72 of 80) 3.8 % (3 of 79)100.0 % (1 of 1)
Methyl89.0 % (219 of 246)90.2 % (111 of 123)87.8 % (108 of 123)

1. DNA Polymerase X

MLTLIQGKKI VNHLRSRLAF EYNGQLIKIL SKNIVAVGSL RREEKMLNDV DLLIIVPEKK LLKHVLPNIR IKGLSFSVKV CGERKCVLFI EWEKKTYQLD LFTALAEEKP YAIFHFTGPV SYLIRIRAAL KKKNYKLNQY GLFKNQTLVP LKITTEKELI KELGFTYRIP KKRL

Show sample condition
Sample #1

Temperature 298 (±0.2) K, pH 6.5 (±0.25)


#NameIsotope labelingTypeConcentration
1DNA Polymerase X[U-13C; U-15N]0.6 ~ 1.0 mM
2PIPES20 mM
3NaCl500 mM
4DTT10 mM
5AEBSF0.5 mM
6sodium azide0.02 %
Sample #2

Temperature 298 (±0.2) K, pH 6.5 (±0.25)


#NameIsotope labelingTypeConcentration
7DNA Polymerase X[U-15N]0.6 ~ 1.0 mM
8PIPES20 mM
9NaCl500 mM
10DTT10 mM
11AEBSF0.5 mM
12sodium azide0.02 %
Sample #3

Temperature 298 (±0.2) K, pH 6.5 (±0.25)


#NameIsotope labelingTypeConcentration
13DNA Polymerase X0.6 ~ 1.0 mM
14PIPES20 mM
15NaCl500 mM
16DTT10 mM
17AEBSF0.5 mM
18sodium azide0.02 %

LACS Plot; CA
Referencing offset: -0.01 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: -0.01 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: -0.11 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.24 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 25 models in PDB: 1JAJ, Strand ID: A Detail

Release date
2002-04-04
Citation 1
Letter to the Editor: 1H, 15N, and 13C Resonance Assignments for a 20 kDa DNA Polymerase from African Swine Fever Virus
Maciejewski, M.W., Pan, B., Shin, R., Denninger, A., Mullen, G.P.
J. Biomol. NMR (2001), 21, 177-178, PubMed , DOI:
Show more 3 citaions
Citation 2
NMRPipe: a multidimensional spectral processing system based on UNIX pipes
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A.
J. Biomol. NMR (1995), 6, 277-293, PubMed 8520220 , DOI 10.1007/bf00197809 ,
Citation 3
The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
Bartels, C., Xia, T., Billeter, M., Guntert, P., Wuthrich, K.
J. Biomol. NMR (1995), 6, 1-10, PubMed 22911575 , DOI 10.1007/BF00417486 ,
Citation 4
Analysis of the complete nucleotide sequence of African swine fever virus
Yanez, R.J., Rodriguez, J.M., Nogal, M.L., Yuste, L., Enriquez, C., Rodriguez, J.F., Vinuela, E.
Virology (1995), 208, 249-278, PubMed 11831707 , DOI 10.1006/viro.1995.1149 ,
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    Title VF118_ASFB7 Entity Uncharacterized protein A118R
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    Title VF153_ASFB7 Entity Lectin-like protein EP153R
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    Title VF354_ASFB7 Entity Uncharacterized protein B354L
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    Title VF71_ASFB7 Entity Protein DP71L
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    Title CD2H_ASFB7 Entity CD2 homolog
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    Title P54_ASFB7 Entity Envelope protein p54
  Swiss-Prot: Q07383 released on 2009-05-05
    Title VF84_ASFB7 Entity Transmembrane protein EP84R
  Swiss-Prot: Q07385 released on 2009-05-05
    Title VF145_ASFB7 Entity Uncharacterized protein K145R
  Swiss-Prot: Q65132 released on 2009-05-05
    Title VF83L_ASFB7 Entity Uncharacterized protein L83L
  Swiss-Prot: Q65133 released on 2009-05-05
    Title 3605L_ASFB7 Entity Protein MGF 360-5L
  Swiss-Prot: Q65134 released on 2009-05-05
    Title VF69R_ASFB7 Entity Uncharacterized membrane protein X69R
  Swiss-Prot: Q65135 released on 2009-05-05
    Title 3003L_ASFB7 Entity Protein MGF 300-3L
  Swiss-Prot: Q65136 released on 2009-05-05
    Title 3004L_ASFB7 Entity Protein MGF 300-4L
  Swiss-Prot: Q65137 released on 2009-05-05
    Title 3609L_ASFB7 Entity Protein MGF 360-9L
  Swiss-Prot: Q65140 released on 2009-05-05
    Title VF151_ASFB7 Entity Protein A151R
  Swiss-Prot: Q65141 released on 2009-05-05
    Title 36015_ASFB7 Entity Protein MGF 360-15R
  Swiss-Prot: Q65144 released on 2009-05-05
    Title VF317_ASFB7 Entity Uncharacterized protein F317L
  Swiss-Prot: Q65145 released on 2009-05-05
    Title VF165_ASFB7 Entity Uncharacterized protein F165R
  Swiss-Prot: Q65146 released on 2009-05-05
    Title PRIM_ASFB7 Entity Putative helicase/primase complex protein
  Swiss-Prot: Q65147 released on 2009-05-05
    Title VF205_ASFB7 Entity Uncharacterized protein K205R
  Swiss-Prot: Q65148 released on 2009-05-05
    Title VF424_ASFB7 Entity Probable methyltransferase EP424R
  Swiss-Prot: Q65149 released on 2009-05-05
    Title VF152_ASFB7 Entity Uncharacterized protein EP152R
  Swiss-Prot: Q65151 released on 2009-05-05
    Title VF364_ASFB7 Entity ERCC4 domain-containing protein EP364R
  Swiss-Prot: Q65152 released on 2009-05-05
    Title VF249_ASFB7 Entity Uncharacterized protein M1249L
  Swiss-Prot: Q65153 released on 2009-05-05
    Title VF448_ASFB7 Entity Uncharacterized protein M448R
  Swiss-Prot: Q65154 released on 2009-05-05
    Title VF129_ASFB7 Entity Uncharacterized protein C129R
  Swiss-Prot: Q65155 released on 2009-05-05
    Title VF84L_ASFB7 Entity Uncharacterized protein C84L
  Swiss-Prot: Q65156 released on 2009-05-05
    Title VF717_ASFB7 Entity Uncharacterized protein C717R
  Swiss-Prot: Q65157 released on 2009-05-05
    Title VF122_ASFB7 Entity Uncharacterized protein C122R
  Swiss-Prot: Q65158 released on 2009-05-05
    Title VF257_ASFB7 Entity Transmembrane protein C257L
  Swiss-Prot: Q65160 released on 2009-05-05
    Title VF315_ASFB7 Entity Uncharacterized protein C315R
  Swiss-Prot: Q65161 released on 2009-05-05
    Title VF62_ASFB7 Entity Uncharacterized protein C62L
  Swiss-Prot: Q65162 released on 2009-05-05
    Title H962R_ASFB7 Entity Putative helicase C962R
  Swiss-Prot: Q65164 released on 2009-05-05
    Title TPRT_ASFB7 Entity Trans-prenyltransferase
  Swiss-Prot: Q65165 released on 2009-05-05
    Title P49_ASFB7 Entity Structural protein p49
  Swiss-Prot: Q65166 released on 2009-05-05
    Title VF169_ASFB7 Entity Transmembrane protein B169L
  Swiss-Prot: Q65167 released on 2009-05-05
    Title VF475_ASFB7 Entity Uncharacterized protein B475L
  Swiss-Prot: Q65169 released on 2009-05-05
    Title VF602_ASFB7 Entity Protein B602L
  Swiss-Prot: Q65170 released on 2009-05-05
    Title VF385_ASFB7 Entity Zinc finger protein B385R
  Swiss-Prot: Q65171 released on 2009-05-05
    Title VF125_ASFB7 Entity Uncharacterized protein B125R
  Swiss-Prot: Q65172 released on 2009-05-05
    Title VF117_ASFB7 Entity Uncharacterized protein B117L
  Swiss-Prot: Q65173 released on 2009-05-05
    Title VF407_ASFB7 Entity Uncharacterized protein B407L
  Swiss-Prot: Q65174 released on 2009-05-05
    Title VF175_ASFB7 Entity Uncharacterized protein B175L
  Swiss-Prot: Q65175 released on 2009-05-05
    Title VF263_ASFB7 Entity Uncharacterized protein B263R
  Swiss-Prot: Q65176 released on 2009-05-05
    Title VFB66_ASFB7 Entity Transmembrane protein B66L
  Swiss-Prot: Q65177 released on 2009-05-05
    Title VF134_ASFB7 Entity Uncharacterized protein G1340L
  Swiss-Prot: Q65178 released on 2009-05-05
    Title VF123_ASFB7 Entity Uncharacterized protein CP123L
  Swiss-Prot: Q65179 released on 2009-05-05
    Title PP62_ASFB7 Entity Polyprotein pp62
  Swiss-Prot: Q65180 released on 2009-05-05
    Title VF312_ASFB7 Entity Uncharacterized protein CP312R
  Swiss-Prot: Q65181 released on 2009-05-05
    Title RPB5_ASFB7 Entity Putative DNA-directed RNA polymerase subunit 5 homolog
  Swiss-Prot: Q65182 released on 2009-05-05
    Title VF345_ASFB7 Entity Uncharacterized protein D345L
  Swiss-Prot: Q65183 released on 2009-05-05
    Title VF183_ASFB7 Entity Uncharacterized protein S183L
  Swiss-Prot: Q65184 released on 2009-05-05
    Title RPB3_ASFB7 Entity Putative DNA-directed RNA polymerase subunit 3 homolog
  Swiss-Prot: Q65185 released on 2009-05-05
    Title VF171_ASFB7 Entity Uncharacterized protein H171R
  Swiss-Prot: Q65186 released on 2009-05-05
    Title VF124_ASFB7 Entity Uncharacterized protein H124R
  Swiss-Prot: Q65187 released on 2009-05-05
    Title VFH33_ASFB7 Entity Protein H339R
  Swiss-Prot: Q65188 released on 2009-05-05
    Title VF108_ASFB7 Entity Protein H108R
  Swiss-Prot: Q65189 released on 2009-05-05
    Title VF233_ASFB7 Entity Uncharacterized protein H233R
  Swiss-Prot: Q65190 released on 2009-05-05
    Title VF240_ASFB7 Entity Uncharacterized protein H240R
  Swiss-Prot: Q65191 released on 2009-05-05
    Title VF509_ASFB7 Entity Putative ATP-dependent RNA helicase QP509L
  Swiss-Prot: Q65192 released on 2009-05-05
    Title NIFSL_ASFB7 Entity NifS-like protein
  Swiss-Prot: Q65193 released on 2009-05-05
    Title VF184_ASFB7 Entity Uncharacterized protein E184L
  Swiss-Prot: Q65195 released on 2009-05-05
    Title VF423_ASFB7 Entity Uncharacterized protein E423R
  Swiss-Prot: Q65196 released on 2009-05-05
    Title VF301_ASFB7 Entity Uncharacterized protein E301R
  Swiss-Prot: Q65197 released on 2009-05-05
    Title VF146_ASFB7 Entity Uncharacterized protein E146L
  Swiss-Prot: Q65198 released on 2009-05-05
    Title VF199_ASFB7 Entity Cysteine-rich protein E199L
  Swiss-Prot: Q65199 released on 2009-05-05
    Title DUTP_ASFB7 Entity Deoxyuridine 5'-triphosphate nucleotidohydrolase
  Swiss-Prot: Q65200 released on 2009-05-05
    Title VF248_ASFB7 Entity Protein E248R
  Swiss-Prot: Q65201 released on 2009-05-05
    Title P14_ASFB7 Entity Structural protein p14.5
  Swiss-Prot: Q65202 released on 2009-05-05
    Title APE_ASFB7 Entity Probable AP endonuclease
  Swiss-Prot: Q65203 released on 2009-05-05
    Title VF111_ASFB7 Entity Uncharacterized protein E111R
  Swiss-Prot: Q65204 released on 2009-05-05
    Title VFE66_ASFB7 Entity Uncharacterized protein E66L
  Swiss-Prot: Q65205 released on 2009-05-05
    Title VF267_ASFB7 Entity Uncharacterized protein I267L
  Swiss-Prot: Q65206 released on 2009-05-05
    Title VFD38_ASFB7 Entity Uncharacterized protein DP238L
  Swiss-Prot: Q65207 released on 2009-05-05
    Title VF63R_ASFB7 Entity Uncharacterized protein DP63R
  Swiss-Prot: Q65208 released on 2009-05-05
    Title 50511_ASFB7 Entity Protein MGF 505-11L
  Swiss-Prot: Q65209 released on 2009-05-05
    Title 1002L_ASFB7 Entity Protein MGF 100-2L
  Swiss-Prot: Q65210 released on 2009-05-05
    Title 1003L_ASFB7 Entity Protein MGF 100-3L
  Swiss-Prot: Q65211 released on 2009-05-05
    Title 36018_ASFB7 Entity Protein MGF 360-18R
  Swiss-Prot: Q65214 released on 2009-05-05
    Title DP60R_ASFB7 Entity Uncharacterized protein DP60R
  Swiss-Prot: Q89424 released on 2009-05-05
    Title P17_ASFB7 Entity Major structural protein p17
  Swiss-Prot: Q89443 released on 2009-05-05
    Title H962L_ASFB7 Entity Putative RNA helicase B962L
  Swiss-Prot: Q89445 released on 2009-05-05
    Title VFD29_ASFB7 Entity Uncharacterized protein D129L
  Swiss-Prot: Q89525 released on 2009-05-05
    Title VF113_ASFB7 Entity Putative ATP-dependent RNA helicase D1133L
  Swiss-Prot: Q89554 released on 2009-05-05
    Title 3002R_ASFB7 Entity Protein MGF 300-2R
  Swiss-Prot: Q89581 released on 2009-05-05
    Title VF706_ASFB7 Entity Putative ATP-dependent RNA helicase Q706L
  Swiss-Prot: Q89642 released on 2009-05-05
    Title 5053R_ASFB7 Entity Protein MGF 505-3R
  Swiss-Prot: Q89667 released on 2009-05-05
    Title KP86R_ASFB7 Entity Uncharacterized protein KP86R/DP86L
  Swiss-Prot: Q89675 released on 2009-05-05
    Title VF79_ASFB7 Entity Uncharacterized protein D79L
  Swiss-Prot: Q89702 released on 2009-05-05
    Title 5052R_ASFB7 Entity Protein MGF 505-2R
  Swiss-Prot: Q89705 released on 2009-05-05
    Title 3001L_ASFB7 Entity Protein MGF 300-1L
  Swiss-Prot: Q89740 released on 2009-05-05
    Title 5059R_ASFB7 Entity Protein MGF 505-9R
  Swiss-Prot: Q89768 released on 2009-05-05
    Title 5054R_ASFB7 Entity Protein MGF 505-4R
  Swiss-Prot: Q89769 released on 2009-05-05
    Title P10_ASFB7 Entity Structural DNA-binding protein p10
  Swiss-Prot: Q89777 released on 2009-05-05
    Title 5055R_ASFB7 Entity Protein MGF 505-5R
  Swiss-Prot: Q89829 released on 2009-05-05
    Title VF93L_ASFB7 Entity Uncharacterized membrane protein KP93L/DP93R
  Swiss-Prot: Q89869 released on 2009-05-05
    Title 50510_ASFB7 Entity Protein MGF 505-10R
  Swiss-Prot: Q89907 released on 2009-05-05
    Title VF339_ASFB7 Entity Uncharacterized protein D339L
  Swiss-Prot: Q89925 released on 2009-05-05
    Title 5057R_ASFB7 Entity Protein MGF 505-7R
  Swiss-Prot: Q65143 released on 2008-11-25
    Title VF859_ASFB7 Entity Probable helicase A859L
  Swiss-Prot: Q65159 released on 2007-10-23
    Title PAP1_ASFB7 Entity Putative poly(A) polymerase catalytic subunit
  Swiss-Prot: Q08358 released on 2005-08-30
    Title PP220_ASFB7 Entity Polyprotein pp220
  Swiss-Prot: P69180 released on 2005-02-15
    Title IAP_ASFB7 Entity Inhibitor of apoptosis protein
  Swiss-Prot: P68742 released on 2004-12-07
    Title VHLP_ASFB7 Entity Viral histone-like protein
  Swiss-Prot: P68744 released on 2004-12-07
    Title 1106L_ASFB7 Entity Protein MGF 110-6L
  Swiss-Prot: Q07384 released on 2002-01-23
    Title VF421_ASFB7 Entity Uncharacterized protein K421R
  Swiss-Prot: Q65163 released on 1997-11-01
    Title FLSO_ASFB7 Entity FAD-linked sulfhydryl oxidase
  Swiss-Prot: P42484 released on 1995-11-01
    Title RPB6_ASFB7 Entity DNA-directed RNA polymerase subunit 6 homolog
  Swiss-Prot: P42485 released on 1995-11-01
    Title ARBH_ASFB7 Entity Apoptosis regulator Bcl-2 homolog
  Swiss-Prot: P42486 released on 1995-11-01
    Title RPB1_ASFB7 Entity Probable DNA-directed RNA polymerase subunit 1 homolog
  Swiss-Prot: P42487 released on 1995-11-01
    Title RPB2_ASFB7 Entity DNA-directed RNA polymerase subunit 2
  Swiss-Prot: P42488 released on 1995-11-01
    Title RPB10_ASFB7 Entity Putative DNA-directed RNA polymerase subunit 10 homolog
  Swiss-Prot: P42489 released on 1995-11-01
    Title DPOL_ASFB7 Entity DNA polymerase beta
  Swiss-Prot: P42490 released on 1995-11-01
    Title KTHY_ASFB7 Entity Thymidylate kinase
  Swiss-Prot: P42491 released on 1995-11-01
    Title RIR1_ASFB7 Entity Ribonucleoside-diphosphate reductase large subunit
  Swiss-Prot: P42492 released on 1995-11-01
    Title RIR2_ASFB7 Entity Ribonucleoside-diphosphate reductase small chain
  Swiss-Prot: P42493 released on 1995-11-01
    Title PK1_ASFB7 Entity Serine/threonine-protein kinase 1
  Swiss-Prot: P42494 released on 1995-11-01
    Title DPOLX_ASFB7 Entity Repair DNA polymerase X
  Swiss-Prot: P35970 released on 1994-06-01
    Title DNLI_ASFB7 Entity DNA ligase
  Swiss-Prot: P34204 released on 1994-02-01
    Title P30_ASFB7 Entity Phosphoprotein p30
  Swiss-Prot: P32092 released on 1993-10-01
    Title DIPP_ASFB7 Entity mRNA-decapping protein g5R
  Swiss-Prot: P32094 released on 1993-10-01
    Title MCE_ASFB7 Entity Probable mRNA-capping enzyme
  Swiss-Prot: P32510 released on 1993-10-01
    Title P12_ASFB7 Entity Virus attachment protein p12
  Swiss-Prot: Q00942 released on 1993-04-01
    Title TOP2_ASFB7 Entity DNA topoisomerase 2
  Swiss-Prot: Q00946 released on 1993-04-01
    Title VPRT_ASFB7 Entity Cysteine protease S273R
  Swiss-Prot: P27943 released on 1992-08-01
    Title VF196_ASFB7 Entity Late protein I196L
  Swiss-Prot: P27944 released on 1992-08-01
    Title VF226_ASFB7 Entity Late protein I226R
  Swiss-Prot: P27945 released on 1992-08-01
    Title VF329_ASFB7 Entity Transmembrane protein I329L
  Swiss-Prot: P27946 released on 1992-08-01
    Title VF73R_ASFB7 Entity Uncharacterized protein I73R
  Swiss-Prot: P27948 released on 1992-08-01
    Title TFS2_ASFB7 Entity Transcription factor S-II-related protein
  Swiss-Prot: P27949 released on 1992-08-01
    Title UBC_ASFB7 Entity Ubiquitin-conjugating enzyme E2
  Swiss-Prot: P23162 released on 1991-11-01
    Title 3608L_ASFB7 Entity Protein MGF 360-8L
  Swiss-Prot: P23163 released on 1991-11-01
    Title 36016_ASFB7 Entity Protein MGF 360-16R
  Swiss-Prot: P23164 released on 1991-11-01
    Title 36019_ASFB7 Entity Protein MGF 360-19R
  Swiss-Prot: P23165 released on 1991-11-01
    Title 3603L_ASFB7 Entity Protein MGF 360-3L
  Swiss-Prot: P23166 released on 1991-11-01
    Title 3602L_ASFB7 Entity Protein MGF 360-2L
  Swiss-Prot: P23167 released on 1991-11-01
    Title 3601L_ASFB7 Entity Protein MGF 360-1L
  Swiss-Prot: P23168 released on 1991-11-01
    Title 36020_ASFB7 Entity Protein MGF 360-20R
  Swiss-Prot: P22776 released on 1991-08-01
    Title MCP_ASFB7 Entity Major capsid protein
  Swiss-Prot: P18555 released on 1990-11-01
    Title KITH_ASFB7 Entity Thymidine kinase
  Swiss-Prot: P18558 released on 1990-11-01
    Title 1104L_ASFB7 Entity Protein MGF 110-4L
  Swiss-Prot: P18559 released on 1990-11-01
    Title 1102L_ASFB7 Entity Protein MGF 110-2L
  Swiss-Prot: P18560 released on 1990-11-01
    Title 1101L_ASFB7 Entity Protein MGF 110-1L
Related entities 1. DNA Polymerase X, : 1 : 20 : 2 : 3 : 104 entities Detail
More details for 130 related entities
Experiments performed 17 experiments Detail
nullKeywords DNA repair, African swine fever virus, polymerase