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BMRB: 5334


5334
1G03
Backbone 1H, 13C, and 15N resonance assignments and secondary structure of the D54A mutant of HTLV-I capsid protein
Authors
Cornilescu, C.C., Bouamr, F., Carter, C., Tjandra, N.
Assembly
NTD HTLV-I capsid protein
Entity
1. NTD HTLV-I capsid protein (polymer, Thiol state: all free), 134 monomers, 14841.66 Da Detail

PVMHPHGAPP NHRPWQMKDL QAIKQEVSQA APGSPQFMQT IRLAVQQFDP TAKALQDLLQ YLCSSLVASL HHQQLDSLIS EAETRGITSY NPLAGPLRVQ ANNPQQQGLR REYQQLWLAA FAALPGSAKD PSWA


Formula weight
14841.66 Da
Source organism
Human T-cell leukemia virus type I
Exptl. method
NMR
Refine. method
distance geometry simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 97.0 %, Completeness: 59.3 %, Completeness (bb): 91.5 % Detail
Download

Polymer type: polypeptide(L)

Total1H13C15N
All59.3 % (931 of 1569)53.1 % (437 of 823)62.7 % (376 of 600)80.8 % (118 of 146)
Backbone91.5 % (712 of 778)88.9 % (232 of 261)91.7 % (363 of 396)96.7 % (117 of 121)
Sidechain37.2 % (342 of 919)36.5 % (205 of 562)41.0 % (136 of 332) 4.0 % (1 of 25)
Aromatic 0.0 % (0 of 110) 0.0 % (0 of 55) 0.0 % (0 of 52) 0.0 % (0 of 3)
Methyl33.8 % (48 of 142)32.4 % (23 of 71)35.2 % (25 of 71)

1. Human T-cell Leukemia Virus type I

PVMHPHGAPP NHRPWQMKDL QAIKQEVSQA APGSPQFMQT IRLAVQQFDP TAKALQDLLQ YLCSSLVASL HHQQLDSLIS EAETRGITSY NPLAGPLRVQ ANNPQQQGLR REYQQLWLAA FAALPGSAKD PSWA

Show sample condition
Sample #1

Temperature 300 (±0.2) K, pH 6.0 (±0.05)


#NameIsotope labelingTypeConcentration
1Human T-cell Leukemia Virus type I[U-15N]0.8 ~ 1.0 mM
Sample #2

Temperature 300 (±0.2) K, pH 6.0 (±0.05)


#NameIsotope labelingTypeConcentration
2Human T-cell Leukemia Virus type I[U-13C; U-15N]0.8 ~ 1.0 mM

LACS Plot; CA
Referencing offset: -0.25 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: -0.25 ppm, Outliers: 1 Detail
LACS Plot; HA
Referencing offset: 0.19 ppm, Outliers: 2 Detail
LACS Plot; CO
Referencing offset: -0.24 ppm, Outliers: 2 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 1G03, Strand ID: A Detail

Release date
2003-06-09
Citation 1
Backbone 1H, 13C, and 15N resonance assignments and secondary structure of the D54A mutant of HTLV-I capsid protein
Cornilescu, C.C., Bouamr, F., Carter, C., Tjandra, N.
Show more 4 citaions
Citation 2
Structural analysis of the N-terminal domain of the human T-cell leukemia virus capsid protein
Cornilescu, C.C., Bouamr, F., Yao, X., Carter, C., Tjandra, N.
J. Mol. Biol. (2001), 306, 783-797, PubMed 11243788 , DOI 10.1006/jmbi.2000.4395 ,
Citation 3
NMRPipe: a multidimensional spectral processing system based on UNIX pipes
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A.
J. Biomol. NMR (1995), 6, 277-293, PubMed 8520220 ,
Citation 4
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
Cornilescu, G., Delaglio, F., Bax, A.
J. Biomol. NMR (1999), 13, 289-302, PubMed 10212987 ,
Citation 5
A short recollection on the paper entitled "A common sense approach to peak picking in two-, three-, and four-dimensional spectra using automatic computer analysis of contour diagrams" by D.S. Garrett, R. Powers, A.M. Gronenborn, and G.M. Clore [J. Magn. Reson. 95 (1991) 214-220]
J. Magn. Reson. (2011), 213, 364-365, PubMed 22152356 , DOI 10.1016/j.jmr.2011.08.009 ,
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  BMRB: 4249 released on 1999-08-05
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  BMRB: 4312 released on 1999-03-02
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  BMRB: 4109 released on 1999-02-01
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  Swiss-Prot: P14077 released on 1990-01-01
    Title GAG_HTL1M Entity Gag polyprotein
Related entities 1. NTD HTLV-I capsid protein, : 1 : 23 : 21 entities Detail
More details for 45 related entities
Interaction partners 1. NTD HTLV-I capsid protein, : 6 interactors Detail
More details for 6 interactors identified by 1 citations
Experiments performed 7 experiments Detail
nullKeywords HTLV-I, mutant, retrovirus, capsid protein