Jun 14, 2023
We are pleased to announce the release of corrected/combined NMR data files for existing NMR entries of the PDB Core Archive. wwPDB NEWS
Jan 6, 2023
The article about activities of BMRB/BMRBj groups has been published in Nucleic Acid Res.
Jan 11, 2022
A plot showing well-defined regions has been added to the content for combined NMR restraints.
Jan 8, 2022
The article about activities of BMRBj group has been published in Protein Science.
Sep 24, 2021
Tools for BMRB/XML and BMRB/RDF are update. The namespaces of BMRB/XML and BMRB/RDF will be changed respectively.
Sep 21, 2021
A nmrML converter for BMRB metabolomics entries, BMSxNmrML v1.3.0, is available.
Aug 18, 2021
Depositor can submit a release request for an On-Hold entry from the author view page by specifying PubMed ID of the primary citation.
Jul 30, 2021
Graphical content for the chemical shift validation reports is available.
Jul 29, 2021
We released chemical shift validation reports of all BMRB entries in JSON format. The schema is the same as for the combined NMR restraints report file.
Jul 26, 2021
Depositor can access refreshed author view page for uploaded or processed data files. The page contains detailed validation information and graphically represented summary content.
Jul 13, 2021
RCI and derived parameters (S2, NMR RMSD) plots are added as graphical contents for the NMR combined restraints.
Apr 26, 2021
We have changed our group name to BMRBj (Biological Magnetic Resonance Data Bank Japan), formerly kwnon as PDBj-BMRB. We look forward to working with you.
Apr 21, 2021
Entries with extended PDB and CCD ID codes will be distributed in PDBx/mmCIF format only. wwPDB NEWS
Jan 28, 2021
Revised statistics page on BMRB entries is accessible.
Jan 21, 2021
Graphical content for NMR combined restraints of PDB/BMRB entries is available.
Dec 24, 2020
A database replication tool based on XML Schema, xsd2pgschema v5.0.0, is available, which requires JDK14 or later.
Dec 16, 2020
A generation tool of alternative wwPDB validation information, pdbx-validation v3.0.0, is available, which supports NMR restraint validation.
Nov 17, 2020
We released a JSON Schema for the combined NMR restraints report file, which contains restraint statistics and diagnostic information.
Oct 23, 2020
We released an archive of combined NMR restraints (CS+MR) associated with PDB entries in both NMR-STAR and NEF formats. Polymer sequence, atom nomenclature and restraint data have been checked with the coordinate and remediated on the best effort basis. See also restraint statistics and diagnostic information of the combined NMR restraints reported in each JSON file. As of now, the archive contains 2463 valid NEF restraint files, which meet OneDep deposition requirements.
Aug 31, 2020
New Deposition server BMRBdep now available. ADIT-NMR will stop accepting new sessions on Sep 1st, and will stop allowing the completion of existing in-progress depositions on Dec.
Aug 26, 2020
The first PDB entries, 7JIA and 7JIY deposited by the NMR unified data, have been released.
Jul 22, 2020
We have added content on emerging Coronavirus infectious disease (COVID-19) caused by Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
Nov 30, 2020
A database replication tool based on XML Schema, xsd2pgschema v4.1.4, is available.
May 4, 2020
OneDep began accepting upload of NMR experimental data as a single file, either in NMR-STAR or NEF format.
Feb 10, 2020
A generation tool of alternative wwPDB validation information, pdbx-validation v2.0.3, is available, which supports EM map/model validation.
Jan 15, 2020
As of March 2020 the OneDep system will begin accepting upload of NMR experimental data as a single file, either in NMR-STAR or NEF format. wwPDB NEWS
Dec 25, 2019
A generation tool of alternative wwPDB validation information, pdbx-validation v2.0.1, is available, which supports EM map/model validation.
Dec 19, 2019
A database replication tool based on XML Schema, xsd2pgschema v4.0.5, is available.
Nov 19, 2019
A generation tool of alternative wwPDB validation information, pdbx-validation v1.6.5, is available.
Feb 28, 2019
A cross conversion environment of multi dimensional NMR spectra, xyza2pipe v1.0.4, is available.
Dec 19, 2018
A generation tool of alternative wwPDB validation information, pdbx-validation v1.4.0, is available.
Dec 6, 2018
A database replication tool based on XML Schema, xsd2pgschema v3.0.8, is available.
Oct 5, 2018
We made a presentation about PDBj-BMRB activities and alternative wwPDB validation reports at The day of TOGO 2018.
Aug 17, 2018
NMR-STAR Dictionary v3.2.1.9 is available.
Jul 5, 2018
Launch web services enabling SSL.
Jun 29, 2018
A nmrML converter for BMRB metabolomics entries, BMSxNmrML v1.2.0, is available.
Apr 13, 2018
NMR-STAR Dictionary v3.2.1.5 is available.
Apr 5, 2018
NMR-STAR Dictionary v3.2.1.2 is available.
Mar 29, 2018
VirtualBox image (ova) file for MagRO-NMRView and Filt_Robot with CNN noise filter in
NMRToolBOX has been updated.
Feb 5, 2018
NMR-STAR Dictionary v3.2.0.15 is available.
Feb 7, 2018
We have moved SCM site for the following software developped by PDBj-BMRB, BMRBxTool, BMRBoTool, and BMSxNmrML. The software is released under Apache Licence V2, respectively.
Jan 24, 2018
NMR-STAR Dictionary v3.2.0.13 is available.
Jan 24, 2018
BMRB/JSON archive is refreshed.
Dec 20, 2017
A nmrML converter for BMRB metabolomics entries, BMSxNmrML v1.1.0, is available. nmrML documents of the BMRB metabolomics entries are updated from v1.0.rc1 to v1.0.0.
Nov 22, 2017
VirtualBox image (ova) file for MagRO-NMRView and Filt_Robot with CNN noise filter in
NMRToolBOX has been restored.
Oct 19, 2017
A quick tool for fully automated peak identification and noise filtration using Deep Neural Networks, Filt Robot, is available.
Oct 12, 2017
A cross conversion environment of multi dimensional NMR spectra, xyza2pipe v1.0.3, is available.
Oct 11, 2017
NMR data analysis tool, MagRO-NMRView 2.00.12, is available. New feature "Noise/Signal recognition by Deep Neural Networks" added.
Oct 10, 2017
BMRB/XML, BMRB/RDF, BMRB/JSON, and BMRB RDB Snapshot archives are based on the NMR-STAR Dictionary v3.2.0.11.
Sep 26, 2017
NMR-STAR Dictionary v3.2.0.11 is available.
Sep 18, 2017
The article about Data-out activity of PDBj-BMRB group has been published in Protein Science.
Apr 25, 2017
The article about NMRBox, A Resource for Biomolecular NMR Computation, has been published in Biophysical Journal.
Oct 1, 2016
Legacy ADIT-NMR deposition system has been retired. wwPDB news
Updated ADIT-NMR system will continue to accept NMR data associated with a structure currently not accepted by the wwPDB OneDep system (for example, relaxation data, and primary time-domain data) as well as experimental NMR data not associated with deposition of 3D coordinates (BMRB Only).
May 31, 2016
Legacy ADIT-NMR deposition system no longer accepts new session. Live sessions can be accessed until September 30th, 2016. Please use the wwPDB deposition system for new deposition. wwPDB news
Mar 7, 2016
Validation reports for NMR and EM structures are now available. wwPDB news
