12198 BMRB entries and 1812 Metabolomics entries are available on Aug 09, 2018

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PDBj-BMRB group in Osaka University supported by JST-NBDC (Japan Science and Technology Agency - National Bioscience Database Center) contributes to the community for Biomolecular NMR by collection, annotation, validating and archiving experimental NMR data in collaboration with wwPDB (Worldwide Protein Data Bank). Our mission is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of biomolecular NMR spectroscopy. Please deposit your NMR structure and related NMR parameters through our deposition site, OneDep. The released data are available from our BMRB mirror server. Please try our new search service above which allows you to quickly find rich information of biomolecule such as function, sequence, structure, NMR data as well as interaction in multiple databases including BMRB, PDB, EMDB, UniProt, IntAct, BMRB-Metabolomics and Ligand Expo.

Information

Aug 7, 2018

A database replication tool based on XML Schema, xsd2pgschema v2.12.7, is available.

Aug 3, 2018

A generation tool of alternative wwPDB validation information, pdbx-validation v1.3.6, is available.

Jul 20, 2018

NMR data analysis tool, MagRO-NMRView 2.01.15 released.

Jul 5, 2018

Launch web services enabling SSL.

Jun 29, 2018

A nmrML converter for BMRB metabolomics entries, BMSxNmrML v1.2.0, is available.

Jun 14, 2018

NMR data analysis tool, MagRO-NMRView 2.01.13, bug fixed version released.

Jun 9, 2018

Full-text index generator of OWL literal, owl-indexer v1.2.5, is available.

Apr 17, 2018

BMRB/XML, BMRB/RDF, BMRB/JSON and BMRB RDB Snapshot archives are based on the NMR-STAR Dictionary v3.2.1.5.

Apr 13, 2018

NMR-STAR Dictionary v3.2.1.5 is available.

Apr 9, 2018

PDBML-validation and wwPDB/RDF-validation are available via either HTTP or rsync protocol. Note that these archives are experimental and may be changed or replaced in the future.

Apr 5, 2018

NMR-STAR Dictionary v3.2.1.2 is available.

Mar 29, 2018

VirtualBox image (ova) file for MagRO-NMRView and Filt_Robot with CNN noise filter in NMRToolBOX has been updated.

Feb 5, 2018

NMR-STAR Dictionary v3.2.0.15 is available.

Feb 9, 2018

BMRB/XML, BMRB/RDF, BMRB/JSON and BMRB RDB Snapshot archives are based on the NMR-STAR Dictionary v3.2.0.15.

Feb 7, 2018

We have moved SCM site for the following software developped by PDBj-BMRB, BMRBxTool, BMRBoTool, and BMSxNmrML. The software is released under Apache Licence V2, respectively.

Jan 24, 2018

NMR-STAR Dictionary v3.2.0.13 is available.

Jan 24, 2018

BMRB/JSON archive is refreshed.


Dec 20, 2017

A nmrML converter for BMRB metabolomics entries, BMSxNmrML v1.1.0, is available. nmrML documents of the BMRB metabolomics entries are updated from v1.0.rc1 to v1.0.0.

Dec 4, 2017

Full-text index generator of OWL literal, owl-indexer v1.2.2, is available.

Nov 22, 2017

Quick instructions for CNN noise filter are available.

Nov 22, 2017

VirtualBox image (ova) file for MagRO-NMRView and Filt_Robot with CNN noise filter in NMRToolBOX has been restored.

Nov 8, 2017

BMRB RDB Snapshot is based on PostgreSQL 10's tool chain.

Oct 19, 2017

A quick tool for fully automated peak identification and noise filtration using Deep Neural Networks, Filt Robot, is available.

Oct 16, 2017

The article about nmrML has been published in Analytical Chemistry.

Oct 12, 2017

A cross conversion environment of multi dimensional NMR spectra, xyza2pipe v1.0.3, is available.

Oct 11, 2017

NMR data analysis tool, MagRO-NMRView 2.00.12, is available. New feature "Noise/Signal recognition by Deep Neural Networks" added.

Oct 10, 2017

BMRB/XML, BMRB/RDF, BMRB/JSON and BMRB RDB Snapshot archives are based on the NMR-STAR Dictionary v3.2.0.11.

Sep 26, 2017

NMR-STAR Dictionary v3.2.0.11 is available.

Sep 18, 2017

The article about Data-out activity of PDBj-BMRB group has been published in Protein Science.

Apr 25, 2017

The article about NMRBox, A Resource for Biomolecular NMR Computation, has been published in Biophysical Journal.

Mar 7, 2017

The article about OneDep has been published in Structure.


Oct 1, 2016

Legacy ADIT-NMR deposition system has been retired. wwPDB news
Updated ADIT-NMR system will continue to accept NMR data associated with a structure currently not accepted by the wwPDB OneDep system (for example, relaxation data, and primary time-domain data) as well as experimental NMR data not associated with deposition of 3D coordinates (BMRB Only).

May 31, 2016

Legacy ADIT-NMR deposition system no longer accepts new session. Live sessions can be accessed until September 30th, 2016. Please use the wwPDB deposition system for new deposition. wwPDB news

May 5, 2016

The article about BMRB/XML and BMRB/RDF has been published in Journal of Biomedical Semantics.

Mar 7, 2016

Validation reports for NMR and EM structures are now available. wwPDB news

Feb 1, 2016

wwPDB deposition system is now available for NMR and EM structures.